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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
candidate regulatory elements
2
chromatin state
2
target gene predictions
1
caQTL
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
in vitro differentiated cells
Biosample term
23
retina
20
pigmented layer of retina
18
monocyte
16
endothelial cell
16
fibroblast
13
macrophage
12
excitatory neuron
10
kidney
10
pericyte cell
9
smooth muscle cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
islet of Langerhans
7
pancreatic acinar cell
7
pancreatic alpha cell
6
B cell
6
T cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
5
erythroblast
5
heart
5
inhibitory neuron
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
fibroblast of cardiac tissue
4
liver
4
memory B cell
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 1 cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
retinal pigment epithelial cell
3
right atrium auricular region
3
stomach
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
HepG2
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipocyte
2
adipose tissue
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
skin fibroblast
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
Organ
2
connective tissue
1
brain
Life stage
1
unknown
Date released
1
February, 2024
1
June, 2020
1
May, 2022
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
biosample_term_name!
AG04450 cell
biosample_type!
in vitro differentiated cells
Showing 3 of 3 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR069BSZ
released
Annotation file set
: Accessible chromatin annotation for Neural A172 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP