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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
candidate regulatory elements
1
gene expression
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
5
snATAC-seq
1
ATAC-seq
Available data
6
bed bed3+
4
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
in vitro differentiated cells
Biosample term
14
fibroblast
12
endothelial cell
12
excitatory neuron
9
macrophage
9
pericyte cell
7
astrocyte
7
smooth muscle cell
6
endothelial cell of hepatic sinusoid
6
hepatocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic acinar cell
5
pancreatic ductal cell
5
skeletal muscle fiber
4
T cell
4
skeletal muscle satellite cell
3
B cell
3
adipocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
pancreatic alpha cell
3
pancreatic beta cell
3
type II pneumocyte
2
Muller cell
2
adipose-derived stem cell
2
blood vessel smooth muscle cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
mesangial cell
2
mesothelial cell
2
oligodendrocyte precursor cell
2
pancreatic delta cell
2
pancreatic stellate cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
type I muscle cell
2
type I pneumocyte
2
type II muscle cell
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CD8-positive, alpha-beta T cell
1
Schwann cell
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated cell
1
ciliated epithelial cell
1
club cell
1
colon goblet cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
hepatic stellate cell
1
hepatoblast
1
intestinal tuft cell
1
islet of Langerhans
1
leukocyte
1
lung neuroendocrine cell
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte
1
melanocyte
1
memory B cell
1
mesenchymal stem cell
1
metanephros
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
neural cell
1
neuron
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
pigmented layer of retina
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
preadipocyte
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
thyroid follicular cell
1
tissue-resident macrophage
1
trophoblast giant cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
3
connective tissue
Date released
4
November, 2021
3
June, 2020
2
February, 2024
2
May, 2020
1
April, 2020
1
November, 2022
1
October, 2019
Software used
6
macs
Lab
4
Bing Ren, UCSD
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
ENCODE
2
AMP
RFA
4
ENCODE3
1
AMP
1
AMP2
biosample_term_name!
chondrocyte
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP