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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
14
candidate regulatory elements
10
target gene predictions
8
accessible chromatin
8
chromatin state
4
gene expression
2
histone modifications
Annotation Category
8
cis-regulatory elements
Annotation type Category
6
snATAC-seq
2
DNase-seq
Available data
8
bed bed3+
5
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
6
primary cell
2
in vitro differentiated cells
Biosample term
23
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
13
macrophage
10
kidney
neural progenitor cell
10
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
T cell
7
islet of Langerhans
7
pancreatic acinar cell
7
pancreatic alpha cell
6
B cell
6
SGBS preadipocytes
6
adipocyte
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
fibroblast of cardiac tissue
4
liver
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
mesenchymal stem cell
3
natural killer cell
3
regulatory T cell
3
right atrium auricular region
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
medulla oblongata
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
Life stage
1
unknown
Date released
3
November, 2021
2
June, 2020
1
April, 2020
1
February, 2024
1
May, 2022
Software used
7
macs
Lab
3
AMP-T2D consortium
3
Bing Ren, UCSD
1
Stephen Parker, UMich
1
Xin Sun, UCSD
Project
4
AMP
3
ENCODE
1
LungMap
RFA
3
AMP
3
ENCODE3
1
AMP2
1
LungMap2
biosample_term_name!
neural progenitor cell
pons
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR182NKU
released
Annotation file set
: Accessible chromatin from snATAC-seq of leukocyte(Immune cells) from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR481JUN
released
Annotation file set
: Cell type chromatin broad peaks and bw of immune cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR924GPB
released
Annotation file set
: Accessible chromatin annotation for Blood CD20+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR006MLI
released
Annotation file set
: Accessible chromatin annotation for Blood B-cell (CD19+) from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP