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Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
23
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
12
macrophage
10
kidney
10
neural progenitor cell
9
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
T cell
6
adipocyte
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
5
B cell
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
islet of Langerhans
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
fibroblast of cardiac tissue
4
liver
4
pancreatic stellate cell
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
mesenchymal stem cell
3
regulatory T cell
right atrium auricular region
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
2
Ammon's horn
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
cardiac muscle cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
fetal cardiomyocyte
2
frontal cortex
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
muscle of leg
2
natural killer cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I pneumocyte
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
Date released
1
January, 2021
1
June, 2020
1
November, 2021
Software used
3
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
AMP
1
ENCODE
1
T1D
RFA
1
AMP
1
ENCODE3
1
T1D
biosample_term_name!
GM18507
right atrium auricular region
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D