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Schema
Citing CMDGA
Clear Filters
Annotation type
31
histone modifications
10
candidate regulatory elements
6
target gene predictions
5
accessible chromatin
3
gene expression
2
chromatin state
1
binding sites
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
snATAC-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Biosample term
23
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
13
macrophage
10
kidney
10
neural progenitor cell
10
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
T cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
B cell
6
SGBS preadipocytes
6
adipocyte
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
islet of Langerhans
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
fibroblast of cardiac tissue
4
liver
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
mesenchymal stem cell
3
natural killer cell
3
regulatory T cell
3
right atrium auricular region
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
muscle of leg
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
Organ
1
brain
1
prostate gland
Date released
3
June, 2020
May, 2020
1
January, 2021
1
November, 2021
Software used
5
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
3
AMP
1
ENCODE
1
T1D
RFA
3
AMP
1
ENCODE3
1
T1D
month_released!
May, 2020
Showing 5 of 5 results
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR475PYM
released
Annotation file set
: Accessible chromatin annotation for Prostate LNCAP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR783VIR
released
Annotation file set
: Accessible chromatin annotation for Neural Medulla Oblongata from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D