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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
23
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
11
macrophage
10
kidney
10
neural progenitor cell
9
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
T cell
6
adipocyte
6
embryonic stem cell
6
glutamatergic neuron
5
B cell
5
SGBS preadipocytes
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
islet of Langerhans
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
liver
4
pancreatic stellate cell
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
gabaergic neuron
3
heart left ventricle
3
hepatic stellate cell
3
mesenchymal stem cell
3
regulatory T cell
3
right atrium auricular region
3
skin fibroblast
3
stomach
3
tibial nerve
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
2
Ammon's horn
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
cardiac muscle cell
2
caudate nucleus
2
differentiating adipose-derived stem cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
frontal cortex
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
muscle of leg
2
natural killer cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I pneumocyte
1
hindlimb muscle
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
T-helper 1 cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
alveolar macrophage
1
aortic adventitial fibroblast
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
basal cell of epidermis
1
bipolar neuron
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cardiac precursors
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
chorion membrane
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated cell
1
ciliated epithelial cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermis microvascular lymphatic vessel endothelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
embryonic facial prominence
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
extravillous trophoblast
1
eye
1
fetal heart
1
fetal thymocyte
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of villous mesenchyme
1
forelimb muscle
1
foreskin fibroblast
1
foreskin keratinocyte
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
gastrocnemius medialis
1
glomerular epithelium
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hematopoietic multipotent progenitor cell
1
hepatoblast
1
hippocampal neuron
1
iPS DF 4.7 Cell Line
1
inferior parietal cortex
1
intestinal tuft cell
1
iris pigment epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
left cardiac atrium
1
left renal pelvis
1
limb
1
lower motor neuron
Date released
1
January, 2021
1
June, 2020
1
November, 2021
Software used
3
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
AMP
1
ENCODE
1
T1D
RFA
1
AMP
1
ENCODE3
1
T1D
biosample_type!
cell line
organ_slims!
blood vessel
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D