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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
gene expression
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bam
1
bed gappedPeak
1
bigWig
1
xls
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
20
pigmented layer of retina
8
EndoC_BH1
8
retinal pigment epithelial cell
3
pancreatic beta cell
2
aortic endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
pancreatic alpha cell
2
pancreatic ductal cell
2
renal cortical epithelial cell
1
brain microvascular endothelial cell
1
breast epithelium
1
bronchial epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
glomerular epithelium
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic acinar cell
1
pancreatic delta cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
tracheal epithelial cell
1
urothelial cell
0
CMK
Organ
2
epithelium
2
pancreas
1
blood
1
bodily fluid
Life stage
1
adult
1
unknown
Date released
1
October, 2019
1
September, 2022
Software used
2
macs
Lab
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP