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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
5
bed bed3+
4
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
16
monocyte
16
retina
13
pigmented layer of retina
9
kidney
6
hepatocyte
5
pancreatic beta cell
5
pancreatic ductal cell
4
endothelial cell
4
islet of Langerhans
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic stellate cell
3
cardiac fibroblast
3
B cell
3
CD8-positive, alpha-beta T cell
3
coronary artery
3
heart
3
heart left ventricle
3
memory B cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
osteoblast
3
pancreas
3
pancreatic delta cell
3
regulatory T cell
3
retinal pigment epithelial cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
aortic endothelial cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
liver
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasmacytoid dendritic cell
2
right atrium auricular region
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
EndoC_BH1
1
HepG2
1
Schwann cell
1
T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adipose tissue
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
erythrocyte
1
excitatory neuron
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hippocampal neuron
1
immature natural killer cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
leukocyte
1
lower motor neuron
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
medulla oblongata
1
megakaryocyte
1
mesenchymal stem cell
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
myeloid dendritic cell
1
myofibroblast cell
1
naive regulatory T cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
non-classical monocyte
1
occipital lobe
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasma cell
1
pons
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
proximal tubule cells with injury markers
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal pelvis
1
renal principal cell
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
spleen
1
stellate neuron
1
superior temporal gyrus
1
thoracic aorta
1
tissue-resident macrophage
1
type B pancreatic cell
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
2
February, 2024
2
January, 2021
November, 2021
Software used
4
macs
Lab
4
Kyle Gaulton, UCSD
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
biosample_term_name!
choroid plexus epithelial cell
month_released!
November, 2021
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR062PXW
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Schwann
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR821QOK
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR247PPG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR119NFC
released
Annotation file set
: pancreatic delta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP