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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
44
candidate regulatory elements
31
target gene predictions
27
chromatin state
12
gene expression
4
accessible chromatin
4
eQTL
3
differential activity
3
variant allelic effects
2
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
snATAC-seq
Available data
14
bed bed3+
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
10
neural progenitor cell
7
EndoC_BH1
7
pigmented layer of retina
7
retina
6
embryonic stem cell
5
chondrocyte
5
retinal pigment epithelial cell
4
SGBS preadipocytes
4
adipocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
3
stomach
2
B cell
2
CD4-positive helper T cell
2
Rh-4 cell
2
T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
bone marrow cell
2
differentiating adipose-derived stem cell
2
endothelial cell
2
erythroid cell
2
fibroblast
2
fibroblast of cardiac tissue
2
heart
2
islet of Langerhans
2
liver
2
macrophage
2
mesenchymal stem cell
2
monocyte
2
osteoblast
2
pancreas
2
regulatory T cell
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell
2
spinal cord
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Ammon's horn
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
HepG2
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY7
1
PA-TU-8988T cell
1
PANC-1 cell
1
PC-3
1
PC-9
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860
1
REH cell
1
RKO
1
RPMI7951
1
RPMI8226
1
RS4-11 cell
1
RWPE1
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SJCRH30
1
SJSA1
1
SK-CO-1
1
SK-N-DZ
1
SK-N-MC
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
1
SUDHL5
1
SW1116
1
SW480
1
Saos-2 cell
1
T-47D cell
1
T-helper 1 cell
1
T84
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
U-266 cell
1
U-87 MG
1
U2OS
1
U937
1
WERI-Rb-1
1
WI-38 cell
1
Z-138
1
ZR-75-1 cell
1
acute myeloid leukemia
1
adipose tissue
1
adipose-derived mesenchymal stem cell
1
adrenal gland
1
aortic adventitial fibroblast
1
bipolar neuron
1
brain
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac myocyte cell derived cell line
1
caudate nucleus
1
chorion membrane
1
choroid plexus epithelial cell
1
colon cancer cell line
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermal fibroblast
1
dermis microvascular lymphatic vessel endothelial cell
1
embryonic facial prominence
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
esophageal epithelial cell
Organ
2
heart
1
adipose tissue
1
connective tissue
1
epithelium
1
pancreas
Life stage
1
unknown
Date released
2
June, 2020
1
November, 2022
1
September, 2022
Software used
4
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
files.file_type!
bigWig
Showing 4 of 4 results
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Download
FileSet
DSR315TSA
released
Annotation file set
: Accessible chromatin of subcutaneous adipose tissue of 11 out of 17 individuals to generate chromatin accessibility profiles
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR025RWZ
released
Annotation file set
: Accessible chromatin from snATAC-seq of delta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR405HBQ
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR763PMQ
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Fetal Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP