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Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
7
candidate regulatory elements
6
chromatin state
4
eQTL
3
accessible chromatin
3
gene expression
1
binding sites
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
16
fibroblast
10
pericyte cell
6
adipocyte
5
chondrocyte
5
osteoblast
4
fibroblast of cardiac tissue
4
pancreatic stellate cell
3
cardiac fibroblast
3
hepatic stellate cell
3
mesenchymal stem cell
3
skin fibroblast
2
adipose tissue
2
brain pericyte
2
extracellular matrix secreting cell
2
mesangial cell
2
omental fat pad
2
subcutaneous adipose tissue
1
GM23248
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
luteal cell
1
placenta
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
pulmonary interstitial fibroblast
1
stromal cell
Organ
2
adipose tissue
2
connective tissue
1
embryo
1
extraembryonic component
1
placenta
Date released
1
January, 2020
1
November, 2021
1
November, 2022
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
Showing 3 of 3 results
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Download
FileSet
DSR315TSA
released
Annotation file set
: Accessible chromatin of subcutaneous adipose tissue of 11 out of 17 individuals to generate chromatin accessibility profiles
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR983RIG
released
Annotation file set
: Accessible chromatin annotation of Fetal Hematopoeitic Stem Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR849UDT
released
Annotation file set
: Adipose subcutaneous accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP