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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
Fine-mapped variants
3
accessible chromatin
3
chromatin state
3
gene expression
3
target gene predictions
1
binding sites
1
caQTL
1
eQTL
1
histone modifications
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
1
cell line
1
primary cell
1
tissue
Biosample term
6
endothelial cell of hepatic sinusoid
3
cardiac fibroblast
3
coronary artery
3
endothelial cell of lymphatic vessel
2
aortic endothelial cell
2
capillary endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
1
ascending aorta
1
brain microvascular endothelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
fibroblast of pulmonary artery
1
kidney capillary endothelial cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
thoracic aorta
Organ
3
blood vessel
3
vasculature
1
artery
1
epithelium
1
extraembryonic component
1
heart
1
placenta
Life stage
1
adult
1
unknown
Date released
1
February, 2021
1
January, 2020
1
November, 2021
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
organ_slims!
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Showing 3 of 3 results
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Download
FileSet
DSR100TUS
released
Annotation file set
: Accessible chromatin annotation of Fetal Placental Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR351MEA
released
Annotation file set
: Accessible chromatin annotation of ascending aorta from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP