Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
23
retina
19
pigmented layer of retina
17
monocyte
16
fibroblast
13
endothelial cell
13
excitatory neuron
12
macrophage
10
kidney
10
neural progenitor cell
10
pericyte cell
9
retinal pigment epithelial cell
8
B cell
8
EndoC_BH1
8
astrocyte
8
smooth muscle cell
7
T cell
7
islet of Langerhans
6
SGBS preadipocytes
6
embryonic stem cell
6
glutamatergic neuron
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
osteoblast
5
pancreas
5
pancreatic beta cell
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
fibroblast of cardiac tissue
4
liver
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic ductal cell
4
regulatory T cell
4
skeletal muscle satellite cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 1 cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
hepatocyte
3
memory B cell
3
natural killer cell
3
right atrium auricular region
3
skeletal muscle fiber
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I pneumocyte
2
Ammon's horn
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic delta cell
2
plasma cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
Organ
5
connective tissue
Date released
5
November, 2022
Software used
5
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
gamma-delta T cell
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2024
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR632VXG
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Proximal femoral growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956OYT
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Distal femoral growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR870XSB
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Proximal tibial growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR599ELD
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Distal tibial growth plates E67
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR696CUX
released
Annotation file set
: Accessible chromatin of ATAC-seq of chondrocyte Acetabulum E67
Lab:
AMP-T2D consortium
Project:
AMP