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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
11
gene expression
6
accessible chromatin
6
binding sites
3
candidate regulatory elements
Annotation Category
6
cis-regulatory elements
Annotation type Category
5
ATAC-seq
1
snATAC-seq
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
5
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
21
retina
20
pigmented layer of retina
5
hepatocyte
5
islet of Langerhans
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
3
pancreas
2
endothelial cell
2
fibroblast
2
heart left ventricle
2
omental fat pad
2
pancreatic alpha cell
2
pancreatic beta cell
1
cardiac fibroblast
1
A-673 cell
1
Ammon's horn
1
HepG2
1
T cell
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
coronary artery
1
frontal cortex
1
gabaergic neuron
1
globus pallidus
1
glomerular visceral epithelial cell
1
heart
1
hepatic stellate cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
liver
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
medulla oblongata
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
neuron
1
non-neuronal cell
1
occipital lobe
1
oligodendrocyte
1
osteoblast
1
pancreatic acinar cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pons
1
proximal tubule cells with injury markers
1
putamen
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
smooth muscle cell
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
tibial artery
1
tibial nerve
Organ
6
epithelium
4
blood vessel
4
liver
4
vasculature
Life stage
6
adult
2
fetal
1
unknown
Date released
4
February, 2024
1
August, 2021
1
May, 2022
Software used
6
macs
Lab
4
Ines Cebola, Imperial College London
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Project
6
AMP
RFA
6
AMP2
biosample_term_name!
kidney glomerular epithelial cell
Showing 6 of 6 results
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Download
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR573JPW
released
Annotation file set
: Accessible chromatin of liver sinusoidal endothelial cells cultured with 10nM insulin, 320µM palmitic acid and 320 µM oleic acid.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR467GJM
released
Annotation file set
: Accessible chromatin of liver sinusoidal endothelial cells cultured with 10nM insulin and 320µM palmitic acid.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR269PNK
released
Annotation file set
: Accessible chromatin of liver sinusoidal endothelial cells cultured with 10nM insulin.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR195UVD
released
Annotation file set
: Accessible chromatin of liver sinusoidal endothelial cells cultured with basal medium.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP