Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
8
target gene predictions
6
accessible chromatin
4
binding sites
2
caQTL
2
candidate regulatory elements
2
histone modifications
2
variant allelic effects
1
chromatin state
1
eQTL
Annotation Category
6
cis-regulatory elements
Annotation type Category
4
ATAC-seq
2
snATAC-seq
Available data
24
bed bed3+
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
Biosample term
10
neural progenitor cell
7
EndoC_BH1
7
pigmented layer of retina
6
embryonic stem cell
6
retina
5
chondrocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
retinal pigment epithelial cell
3
SGBS preadipocytes
3
adipocyte
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
2
endothelial cell
2
fibroblast
2
skeletal muscle fiber
2
smooth muscle cell
1
CD4-positive helper T cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
adipose tissue
1
gabaergic neuron
1
glial cell
1
islet of Langerhans
1
leukocyte
1
liver
1
macrophage
1
mesenchymal stem cell
1
microglial cell/astrocyte
1
naive regulatory T cell
1
neural cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
preadipocyte
1
skeletal muscle satellite cell
1
type I muscle cell
1
type II muscle cell
Organ
6
epithelium
4
eye
Life stage
1
adult
Date released
4
November, 2022
1
February, 2024
June, 2020
1
May, 2022
Software used
6
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
RFA
4
AMP
2
AMP2
biosample_term_name!
Daoy
files.file_type!
bigWig
month_released!
June, 2020
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR141IRH
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using viral (IMR90.4) ctrl
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR332MGG
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using nonviral (EP1) overexpression of HDAC11
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR011XGG
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using nonviral (EP1) empty
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497CTZ
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using nonviral (EP1) ctrl
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP