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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
14
target gene predictions
8
gene expression
4
accessible chromatin
2
histone modifications
1
binding sites
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
23
retina
20
pigmented layer of retina
18
monocyte
8
retinal pigment epithelial cell
7
hepatocyte
6
embryonic stem cell
6
islet of Langerhans
6
pancreatic beta cell
6
pancreatic ductal cell
5
B cell
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
endothelial cell
5
heart
5
osteoblast
5
pancreas
5
pancreatic alpha cell
5
regulatory T cell
4
CD8-positive, alpha-beta T cell
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
liver
4
natural killer cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
3
cardiac fibroblast
3
T cell
3
T-helper 1 cell
3
coronary artery
3
heart left ventricle
3
kidney
3
macrophage
3
memory B cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
right atrium auricular region
3
smooth muscle cell
3
stomach
3
tibial artery
3
tibial nerve
2
Ammon's horn
2
CD4-positive helper T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
bone marrow cell
2
brain
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast
2
frontal cortex
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
occipital lobe
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
aortic adventitial fibroblast
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
bipolar neuron
1
brain microvascular endothelial cell
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac precursors
1
cerebellar cortex
1
cerebellum
1
chorion membrane
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermis microvascular lymphatic vessel endothelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of proximal tubule
1
erythrocyte
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
excitatory neuron
1
eye
1
fetal heart
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
forelimb muscle
1
foreskin fibroblast
1
foreskin keratinocyte
1
foreskin melanocyte
1
gabaergic neuron
1
gastrocnemius medialis
1
glial cell
1
glomerular epithelium
1
glomerular visceral epithelial cell
1
heart right ventricle
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
iPS DF 4.7 Cell Line
1
immature natural killer cell
1
inferior parietal cortex
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
large intestine
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
limb
1
lower motor neuron
1
mammary epithelial cell
1
mammary gland epithelial cell
1
megakaryocyte
1
mesendoderm
1
microglial cell/astrocyte
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
myofibroblast cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
non-classical monocyte
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
Organ
3
kidney
Life stage
2
fetal
Date released
August, 2021
2
January, 2020
1
February, 2024
1
June, 2020
November, 2021
Software used
4
macs
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
biosample_type!
cell line
month_released!
August, 2021
November, 2021
Showing 4 of 4 results
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Download
FileSet
DSR154JTR
released
Annotation file set
: Cell type chromatin broad peaks and bw of glial Schwann from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR920NWL
released
Annotation file set
: Accessible chromatin annotation for Kidney Fetal kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR151NNQ
released
Annotation file set
: Accessible chromatin annotation of left kidney from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166VPA
released
Annotation file set
: Accessible chromatin annotation of kidney fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP