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Schema
Citing CMDGA
Clear Filters
Annotation type
13
eQTL
11
gene expression
5
accessible chromatin
3
chromatin state
2
Fine-mapped variants
2
binding sites
2
sQTL
2
variant to gene
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ATAC-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
1
primary cell
Biosample term
22
retina
20
pigmented layer of retina
9
kidney
5
islet of Langerhans
3
coronary artery
3
heart
3
heart left ventricle
3
liver
3
pancreas
2
adipose tissue
2
omental fat pad
2
pancreatic ductal cell
2
pancreatic stellate cell
2
right atrium auricular region
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
Schwann cell
1
ascending aorta
1
brain
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
globus pallidus
1
heart right ventricle
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
occipital lobe
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pons
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
putamen
1
renal cortex interstitium
1
renal pelvis
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
spleen
1
superior temporal gyrus
1
thoracic aorta
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
5
pancreas
Life stage
5
adult
Date released
2
May, 2020
June, 2020
1
May, 2021
1
November, 2019
1
September, 2022
Software used
3
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
June, 2020
organ_slims!
large intestine
Showing 5 of 5 results
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Download
FileSet
DSR456JHZ
released
Annotation file set
: Accessible chromatin of ATAC-seq of human islet cytokine-treated for GSE123404
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR941LPG
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 5 T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XQN
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 38 non-diabetic samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935CED
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 43 non-diabetic and T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR507522
released
Annotation file set
: Merged ATAC-seq sites in islets for 23 samples including 4 from Bing Ren at UCSD, 2 from Stephen Parker at UMich, and 17 from Mark McCarthy at Oxford (HP1507 and HP1507UW)
Lab:
AMP-T2D consortium
Project:
AMP