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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
differential activity
3
target gene predictions
2
gene expression
2
histone modifications
1
binding sites
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
DNase-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
2
tissue
Biosample term
18
monocyte
14
fibroblast
13
endothelial cell
12
excitatory neuron
11
macrophage
10
pericyte cell
8
astrocyte
8
smooth muscle cell
6
B cell
6
pancreatic beta cell
5
T cell
5
erythroblast
5
inhibitory neuron
5
pancreatic acinar cell
5
pancreatic alpha cell
5
pancreatic ductal cell
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
memory B cell
4
osteoblast
4
pancreatic delta cell
4
type II pneumocyte
3
T-helper 1 cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
hepatocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
retinal pigment epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
cardiac fibroblast
2
Muller cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipocyte
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glial cell
2
glomerular endothelial cell
2
glutamatergic neuron
2
hepatic stellate cell
2
keratinocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
naive regulatory T cell
2
oligodendrocyte precursor cell
2
plasma cell
2
plasmacytoid dendritic cell
2
renal cortical epithelial cell
2
schwann cell
2
skeletal muscle myoblast
2
skin fibroblast
2
smooth muscle cell of the esophagus
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
aortic adventitial fibroblast
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
immature natural killer cell
1
intestinal tuft cell
1
iris pigment epithelial cell
islet of Langerhans
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
lung neuroendocrine cell
1
luteal cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-pigmented ciliary epithelial cell
1
oligodendrocyte
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral blood stem cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
primordial germ cell
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
regular atrial cardiac myocyte
1
renal epithelial cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
skeletal muscle cell
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the brain vasculature
1
somatic gonadal cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
thyroid follicular cell
1
tracheal epithelial cell
Organ
5
epithelium
5
pancreas
Life stage
adult
1
child
Date released
2
November, 2021
1
January, 2021
1
June, 2020
1
October, 2019
Software used
5
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
2
ENCODE
1
T1D
RFA
2
AMP
2
ENCODE3
1
T1D
biosample_term_name!
CD4-positive helper T cell
islet of Langerhans
relevant_life_stage!
adult
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR864AEY
released
Annotation file set
: Accessible chromatin annotation of Fetal Pancreatic Ductal Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR237XFF
released
Annotation file set
: Accessible chromatin annotation of Ductal Cell (Pancreatic) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR434XUW
released
Annotation file set
: Accessible chromatin annotation for Pancreas HPDE6 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR780YWW
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of ductal
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR920WKD
released
Annotation file set
: Pancreatic ductal cell accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP