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Citing CMDGA
Clear Filters
Annotation type
1632
candidate regulatory elements
1288
target gene predictions
915
chromatin state
642
gene expression
165
eQTL
155
differential activity
127
variant allelic effects
90
binding sites
10
caQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
Fine-mapped variants
2
accessible chromatin
2
other
1
representative DNase hypersensitivity sites
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
71
bed bed3+
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
1
Homo sapiens
Biosample type
2
primary cell
Biosample term
1
CD4-positive helper T cell
1
naive regulatory T cell
Date released
1
February, 2024
1
May, 2020
Software used
macs
6
deseq2
6
samtools
1
bedops
1
pepatac
Lab
1
AMP-T2D consortium
1
Stephen S. Rich Lab @UVA
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
files.file_type!
bigWig
month_released!
March, 2020
organ_slims!
blood vessel
software_used.software.name!
macs
Showing 2 of 2 results
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FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR606KIK
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal naive regulatory T cell
Lab:
AMP-T2D consortium
Project:
AMP