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Annotation type
17
candidate regulatory elements
13
target gene predictions
7
chromatin state
4
accessible chromatin
3
eQTL
2
gene expression
2
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
2
smooth muscle cell of the esophagus
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
Organ
213
epithelium
193
brain
89
connective tissue
78
eye
65
pancreas
50
kidney
42
heart
38
liver
36
vasculature
33
lung
32
skin of body
31
musculature of body
26
blood vessel
22
muscle organ
21
intestine
20
limb
19
thymus
15
bone element
14
spleen
12
blood
12
bodily fluid
12
embryo
11
adrenal gland
11
artery
10
large intestine
10
thyroid gland
9
extraembryonic component
8
lymph node
8
skeleton
8
stomach
7
adipose tissue
7
mammary gland
5
gonad
5
prostate gland
4
esophagus
4
lymphatic vessel
4
placenta
4
ureter
3
bronchus
3
nerve
3
penis
3
small intestine
3
uterus
2
bone marrow
2
lymphoid tissue
2
ovary
2
spinal cord
2
testis
2
vein
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
urinary bladder
Date released
2
June, 2020
2
November, 2021
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
Collection Tags
2
AMP
2
ChIP-Atlas
2
T2DKP
RFA
2
AMP
2
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR279PTE
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR530GKX
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR827TCY
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Esophagus squamous epithelium from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR789NPM
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Esophagus muscularis mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP