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Clear Filters
Annotation type
  • 28candidate regulatory elements
  • 19target gene predictions
  • 15chromatin state
  • 12binding sites
  • 7accessible chromatin
  • 5histone modifications
  • 1variant allelic effects
Annotation Category
  • 7cis-regulatory elements
Annotation type Category
  • 4DNase-seq
  • 3snATAC-seq
Available data
  • 7bed bed3+
  • 3bigWig
File set status
  • 7released
Genome assembly (visualization)
  • 7hg19
  • 3GRCh38
Organism
  • 7Homo sapiens
Biosample type
  • 5primary cell
  • 1cell line
  • 1in vitro differentiated cells
Biosample term
  • 2luminal epithelial cell of mammary gland
  • 2mammary gland epithelial cell
  • 1MCF-7
  • 1fibroblast of mammary gland
  • 1mammary epithelial cell
Organ
  • 212epithelium
  • 88connective tissue
  • 65pancreas
  • 59eye
  • 50kidney
  • 42brain
  • 36vasculature
  • 27musculature of body
  • 26blood vessel
  • 26heart
  • 24liver
  • 21intestine
  • 20limb
  • 15bone element
  • 15lung
  • 13skin of body
  • 12blood
  • 12bodily fluid
  • 12embryo
  • 11artery
  • 10large intestine
  • 9extraembryonic component
  • 8lymph node
  • 8skeleton
  • 8stomach
  • 7adipose tissue
  • 7adrenal gland
  • 7mammary gland
  • 5gonad
  • 5prostate gland
  • 4esophagus
  • 4lymphatic vessel
  • 4placenta
  • 4ureter
  • 3bronchus
  • 3nerve
  • 3penis
  • 3small intestine
  • 3uterus
  • 2bone marrow
  • 2lymphoid tissue
  • 2ovary
  • 2spinal cord
  • 2spleen
  • 2testis
  • 2thymus
  • 2thyroid gland
  • 2vein
  • 1breast
  • 1mouth
  • 1nose
  • 1tongue
  • 1trachea
  • 1urinary bladder
Date released
  • 4June, 2020
  • 3November, 2021
Software used
  • 7macs
Lab
  • 4AMP-T2D consortium
  • 3Bing Ren, UCSD
Project
  • 4AMP
  • 3ENCODE
Collection Tags
  • 4ChIP-Atlas
  • 3AMP
  • 3T2DKP
RFA
  • 4AMP
  • 3ENCODE3

Showing 7 of 7 results

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  • FileSet

    DSR221MTY

    released

    Annotation file set: Accessible chromatin annotation of Mammary Luminal Epithelial Cell 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR245LTB

    released

    Annotation file set: Accessible chromatin annotation of Mammary Luminal Epithelial Cell 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR492XEZ

    released

    Annotation file set: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR645VUL

    released

    Annotation file set: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR284SDQ

    released

    Annotation file set: Accessible chromatin annotation for Breast HMF from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR478XSH

    released

    Annotation file set: Accessible chromatin annotation for Breast HMEC from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR534MWT

    released

    Annotation file set: Accessible chromatin annotation for Breast Breast cells from ChIP-atlas
    Lab: AMP-T2D consortium
    Project: AMP
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