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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
4
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
40
stomach
38
heart
33
lung
33
muscle of arm
30
brain
30
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
27
placenta
26
left lung
23
A549
22
right lung
21
thymus
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
left kidney
16
spinal cord
16
spleen
14
B cell
14
CD4-positive, alpha-beta memory T cell
14
liver
12
MCF-7
12
foreskin keratinocyte
11
foreskin fibroblast
11
heart left ventricle
10
sigmoid colon
9
K562
9
breast cancer cell
9
cardiac muscle cell
9
neural progenitor cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
adipose tissue
8
body of pancreas
8
chorionic villus
8
endothelial cell of umbilical vein
8
fibroblast of lung
8
gastrocnemius medialis
8
mononuclear cell
8
muscle of trunk
8
ovary
7
CD8-positive, alpha-beta T cell
7
H9
7
Peyer's patch
7
endocrine pancreas
7
keratinocyte
7
layer of hippocampus
7
mammary epithelial cell
7
melanoma
7
neurosphere
7
psoas muscle
7
retina
7
trophoblast cell
7
upper lobe of left lung
6
HeLa-S3
6
T-helper 1 cell
6
bronchial epithelial cell
6
dermis blood vessel endothelial cell
6
endothelial cell of hepatic sinusoid
6
esophagus squamous epithelium
6
fibroblast cell line
6
heart right ventricle
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
natural killer cell
6
pancreas
6
prostate gland
6
regulatory T cell
6
right renal pelvis
6
skeletal muscle tissue
6
testis
6
thyroid gland
6
transverse colon
5
22Rv1
5
HEK293
5
HepG2
5
SK-N-SH
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
breast epithelium
5
caudate nucleus
5
endodermal cell
5
epithelial cell of prostate
5
esophagus muscularis mucosa
5
fibroblast of dermis
5
foreskin melanocyte
5
gastroesophageal sphincter
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
mesodermal cell
5
neuronal stem cell
5
omental fat pad
5
osteoblast
5
parathyroid adenoma
5
peripheral blood mononuclear cell
5
prostate cancer cell line
5
skeletal muscle myoblast
5
tibial nerve
4
GM06990
4
GM08714
4
GM12864
4
GM12865
4
GM12875
4
GM12878
4
HL-60
4
IMR-90
4
SK-N-DZ
4
SK-N-MC
4
T cell
4
T-cell
4
WERI-Rb-1
4
angular gyrus
4
aorta
4
ascending aorta
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of cardiac tissue
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
glioblastoma multiforme cancer stem cell
4
hepatocyte
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuroblastoma cell
4
neutrophil
4
retinal pigment epithelial cell
4
right renal cortex interstitium
4
temporal lobe
4
thoracic aorta
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caco-2 cell
3
Daoy
3
GM10248
3
GM10266
3
GM12801
3
GM12873
3
GM12874
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
H1-hESC
3
HAP-1
3
HT-29
3
HUES6
3
HUES64
3
KBM-7
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
NB4
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY3
OCI-LY7
3
PC-3
3
PC-9
3
RPMI8226
3
RWPE1
3
SJSA1
3
SW480
3
T-cell acute lymphoblastic leukemia
3
T47D
3
Tumor-derived cell line
3
acute myeloid leukemia
3
cerebellum
Organ
5
connective tissue
Life stage
2
adult
2
unknown
Date released
3
February, 2021
2
September, 2022
Software used
2
encode-ccres
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
gene expression
biosample_term_name!
C666-1 cell
OCI-LY7
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP