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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
39
target gene predictions
8
gene expression
2
chromatin state
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
cell line
1
stem cell
Biosample term
59
heart
59
stomach
49
lung
49
muscle of arm
48
brain
46
kidney
44
small intestine
42
adrenal gland
42
muscle of leg
41
muscle of back
41
placenta
40
A549
40
common myeloid progenitor, CD34-positive
40
large intestine
39
left lung
33
right lung
32
thymus
30
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
CD4-positive, alpha-beta memory T cell
23
liver
22
B cell
22
spinal cord
22
spleen
19
heart left ventricle
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
15
sigmoid colon
14
adipose tissue
13
mononuclear cell
13
trophoblast cell
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
endothelial cell of umbilical vein
12
gastrocnemius medialis
12
neural progenitor cell
11
CD4-positive, alpha-beta T cell
11
adipocyte
11
endocrine pancreas
11
foreskin fibroblast
11
heart right ventricle
11
layer of hippocampus
11
thyroid gland
11
upper lobe of left lung
10
Peyer's patch
10
fibroblast of lung
10
muscle of trunk
10
ovary
10
psoas muscle
10
testis
9
T-helper 1 cell
9
breast cancer cell
9
cardiac muscle cell
9
caudate nucleus
9
keratinocyte
9
neurosphere
9
skeletal muscle tissue
9
temporal lobe
9
transverse colon
8
CD8-positive, alpha-beta T cell
8
H9
HeLa-S3
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
angular gyrus
8
aorta
8
bronchial epithelial cell
8
dermis blood vessel endothelial cell
8
embryonic stem cell
8
esophagus squamous epithelium
8
left cardiac atrium
8
mammary gland epithelial cell
8
regulatory T cell
8
tibial nerve
7
22Rv1
7
ascending aorta
7
breast epithelium
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
endodermal cell
7
epithelial cell of prostate
7
esophagus muscularis mucosa
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
left renal cortex interstitium
7
left renal pelvis
7
lower leg skin
7
mammary epithelial cell
7
retina
7
right renal pelvis
7
skeletal muscle myoblast
7
substantia nigra
6
HepG2
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
chorion membrane
6
coronary artery
6
endometrium adenocarcinoma
6
endothelial cell of hepatic sinusoid
6
esophagus
6
eye
6
fibroblast cell line
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
mature neutrophil
6
myoepithelial cell of mammary gland
6
natural killer cell
6
neutrophil
6
omental fat pad
6
pancreas
6
right renal cortex interstitium
5
CD14-positive, CD16-negative classical monocyte
5
GM12878
5
HEK293
5
LNCaP clone FGC
5
NAMALWA cell
5
T47D
5
cerebellum
5
dermis lymphatic vessel endothelial cell
5
kidney tubule cell
5
limb
5
melanoma
5
mesenchymal stem cell
5
muscle layer of duodenum
5
parathyroid adenoma
5
prostate gland
5
stomach smooth muscle
5
thoracic aorta
5
tongue
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Daoy
4
GM06990
4
GM08714
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM12875
4
GM23248
4
H1-hESC
4
HAP-1
4
HL-60
4
HT-29
4
HUES6
4
HUES64
4
IMR-90
4
KARPAS-422 cell
4
KBM-7
4
LHCN-M2
4
MG63
4
MM.1S
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
PC-9
4
RPMI8226
4
RWPE1
4
SJSA1
4
SK-N-MC
4
SW480
4
T-cell
4
WERI-Rb-1
4
alternatively activated macrophage
4
choroid plexus epithelial cell
4
ectodermal cell
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
frontal cortex
4
germinal matrix
4
glioblastoma multiforme cancer stem cell
4
islet of Langerhans
4
mesodermal cell
4
mucosa of rectum
4
naive T cell
4
neuronal stem cell
4
prostate cancer cell line
4
skeletal muscle satellite cell
4
trophoblast
3
A172
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
Organ
4
embryo
Life stage
3
embryonic
Date released
2
September, 2022
1
August, 2017
1
February, 2021
October, 2022
Software used
2
chromhmm
1
macs
1
r
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
biosample_term_name!
HeLa-S3
month_released!
October, 2022
Showing 4 of 4 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP