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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
61
HeLa-S3
61
stomach
58
heart
50
lung
49
muscle of arm
46
brain
46
small intestine
45
adrenal gland
44
kidney
42
A549
42
H1-hESC
42
placenta
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
39
left lung
35
thymus
33
right lung
32
K562
30
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
B cell
27
CD14-positive monocyte
27
left kidney
24
liver
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
19
HFFc6
18
MCF-7
17
heart left ventricle
16
adipose tissue
16
foreskin keratinocyte
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
H9
15
trophoblast cell
14
mononuclear cell
14
natural killer cell
14
neural progenitor cell
14
ovary
14
psoas muscle
13
adipocyte
13
body of pancreas
13
foreskin fibroblast
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
GM12878
12
chorionic villus
12
endothelial cell
12
gastrocnemius medialis
12
muscle of trunk
12
thyroid gland
11
CD4-positive, alpha-beta T cell
11
cardiac muscle cell
11
endothelial cell of umbilical vein
11
fibroblast of lung
11
keratinocyte
10
Peyer's patch
10
endocrine pancreas
10
heart right ventricle
10
pericyte cell
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
breast cancer cell
9
fibroblast
9
fibroblast of dermis
9
neurosphere
9
retina
9
skeletal muscle tissue
9
smooth muscle cell
8
HepG2
8
SK-N-SH
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
bronchial epithelial cell
8
caudate nucleus
8
fibroblast of cardiac tissue
8
layer of hippocampus
8
mammary gland epithelial cell
8
pancreas
8
pituitary stalk
8
regulatory T cell
8
tibial nerve
7
22Rv1
7
dermis blood vessel endothelial cell
7
epithelial cell of prostate
7
esophagus
7
esophagus squamous epithelium
7
fibroblast cell line
7
hepatocyte
7
left renal cortex interstitium
7
lower leg skin
7
lymphocyte
7
mammary epithelial cell
7
mesenchymal stem cell
7
neuronal stem cell
7
neutrophil
7
right renal pelvis
7
skeletal muscle myoblast
7
trophoblast
6
HEK293
6
IMR-90
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
astrocyte
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
endodermal cell
6
endometrium adenocarcinoma
6
endothelial cell of hepatic sinusoid
6
esophagus muscularis mucosa
6
eye
6
fibroblast of breast
6
immortal human breast epithelial cell line cell
6
macrophage
6
omental fat pad
6
osteoblast
6
parathyroid adenoma
6
temporal lobe
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
GM19238
5
GM19239
5
GM19240
5
HAP-1
5
HCT116
5
HL-60
5
HT-29
5
HUES8
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
SK-N-MC
5
T47D
5
WERI-Rb-1
5
cerebellum
5
choroid plexus epithelial cell
5
colon epithelial cell
5
dermis lymphatic vessel endothelial cell
5
duodenal mucosa
5
left renal pelvis
5
myoepithelial cell of mammary gland
5
prostate gland
5
right renal cortex interstitium
5
skin fibroblast
5
substantia nigra
5
thoracic aorta
5
tongue
4
A673
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caco-2 cell
4
CyT49
4
Daoy
4
GM10248
4
GM10266
4
GM12891
4
GM12892
4
GM23248
4
HUES6
4
HUES64
4
Jurkat
4
KARPAS-422 cell
4
KBM-7
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
MG63
4
NB4
4
NT2-D1 cell
4
OCI-LY1
4
OCI-LY3
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
GM19193
Showing 6 of 6 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP