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Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
8
gene expression
3
binding sites
3
differential activity
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
40
stomach
38
heart
33
lung
33
muscle of arm
30
brain
30
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
27
placenta
26
left lung
23
A549
22
right lung
21
thymus
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
left kidney
16
spinal cord
16
spleen
14
B cell
14
CD4-positive, alpha-beta memory T cell
14
liver
12
MCF-7
12
foreskin keratinocyte
11
foreskin fibroblast
11
heart left ventricle
10
sigmoid colon
9
K562
9
breast cancer cell
9
cardiac muscle cell
9
neural progenitor cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
adipose tissue
8
body of pancreas
8
chorionic villus
8
fibroblast of lung
8
gastrocnemius medialis
8
mononuclear cell
8
muscle of trunk
8
ovary
8
testis
8
trophoblast cell
8
upper lobe of left lung
7
CD8-positive, alpha-beta T cell
7
H9
7
Peyer's patch
7
endocrine pancreas
7
keratinocyte
7
layer of hippocampus
mammary epithelial cell
7
melanoma
7
neurosphere
7
psoas muscle
7
retina
7
thyroid gland
7
transverse colon
6
HeLa-S3
6
T-helper 1 cell
6
bronchial epithelial cell
6
esophagus squamous epithelium
6
fibroblast cell line
6
heart right ventricle
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
natural killer cell
6
pancreas
6
prostate gland
6
regulatory T cell
6
right renal pelvis
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial nerve
5
22Rv1
5
HEK293
5
HepG2
5
SK-N-SH
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
breast epithelium
5
caudate nucleus
5
endodermal cell
5
epithelial cell of prostate
5
esophagus muscularis mucosa
5
fibroblast of dermis
5
foreskin melanocyte
5
gastroesophageal sphincter
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
mesodermal cell
5
neuronal stem cell
5
omental fat pad
5
osteoblast
5
parathyroid adenoma
5
peripheral blood mononuclear cell
5
prostate cancer cell line
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
4
GM06990
4
GM08714
4
GM12864
4
GM12865
4
GM12875
4
GM12878
4
HL-60
4
IMR-90
4
SK-N-DZ
4
SK-N-MC
4
T cell
4
T-cell
4
WERI-Rb-1
4
angular gyrus
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of cardiac tissue
4
fibroblast of mammary gland
4
fibroblast of villous mesenchyme
4
glioblastoma multiforme cancer stem cell
4
hepatocyte
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuroblastoma cell
4
neutrophil
4
retinal pigment epithelial cell
4
stomach smooth muscle
4
tongue
4
trophoblast
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caco-2 cell
3
Daoy
3
GM10248
3
GM10266
3
GM12801
3
GM12873
3
GM12874
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
H1-hESC
3
HAP-1
3
HT-29
3
HUES6
3
HUES64
3
KBM-7
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
NB4
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
RPMI8226
3
RWPE1
3
SJSA1
3
SW480
3
T-cell acute lymphoblastic leukemia
3
T47D
3
Tumor-derived cell line
3
acute myeloid leukemia
3
cardiac fibroblast
3
cerebellum
3
chorion membrane
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
Organ
1
lymph node
Life stage
1
unknown
Date released
3
February, 2021
1
October, 2022
Software used
2
macs
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
mammary epithelial cell
organ_slims!
vasculature
Showing 4 of 4 results
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Download
FileSet
DSR445KPQ
released
Annotation file set
: Binding sites annotation for GM12801 (GM12801) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR263TYZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM12801
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR814IBE
released
Annotation file set
: Binding sites annotation for Blood GM12801 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP