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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
2
candidate regulatory elements
1
accessible chromatin
1
gene expression
1
target gene predictions
variant allelic effects
0
binding sites
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
22
heart
20
A549
19
brain
19
stomach
17
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
liver
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
K562
9
breast cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
B cell
8
MCF-7
8
embryonic stem cell
8
heart left ventricle
8
mature neutrophil
8
neural progenitor cell
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
adipose tissue
7
melanoma
7
mononuclear cell
7
spleen
6
fibroblast cell line
6
fibroblast of lung
6
foreskin fibroblast
6
left cardiac atrium
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
heart right ventricle
5
islet of Langerhans
5
layer of hippocampus
5
prostate cancer cell line
5
sigmoid colon
5
skeletal muscle myoblast
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
GM12878
4
H1-hESC
4
HeLa-S3
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
mesenchymal stem cell
4
muscle of trunk
4
neuroblastoma cell
4
osteoblast
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
HEK293
3
HL-60
3
IMR-90
3
KARPAS-422 cell
3
NAMALWA cell
3
NT2-D1 cell
3
Peyer's patch
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
ascending aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
liposarcoma
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
right cardiac atrium
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
synovial sarcoma cell
3
thoracic aorta
3
tibial artery
3
triple-negative breast cancer
3
trophoblast
2
BL-2 cell
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
Jurkat
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NB4
2
NCI-H460 cell
Organ
6
heart
Life stage
1
embryonic
Date released
5
February, 2024
1
September, 2022
Software used
6
chromhmm
Lab
5
Patrick T. Ellinor, Broad
1
AMP-T2D consortium
Project
6
AMP
RFA
6
AMP
annotation_type!
variant allelic effects
organ_slims!
epithelium
Showing 6 of 6 results
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Download
FileSet
DSR195ABN
released
Annotation file set
: Chromatin states for BSS01127 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885XQV
released
Annotation file set
: Chromatin state from ChIP-seq for frozen human left atrium lateral free wall of LA1623
Lab:
Patrick T. Ellinor, Broad
Project:
AMP
FileSet
DSR322XKD
released
Annotation file set
: Chromatin state from ChIP-seq for frozen human left atrium lateral free wall of LA1600
Lab:
Patrick T. Ellinor, Broad
Project:
AMP
FileSet
DSR988BKL
released
Annotation file set
: Chromatin state from ChIP-seq for frozen human left atrium lateral free wall of LA1294
Lab:
Patrick T. Ellinor, Broad
Project:
AMP
FileSet
DSR778BXQ
released
Annotation file set
: Chromatin state from ChIP-seq for frozen human left atrium lateral free wall of LA1221
Lab:
Patrick T. Ellinor, Broad
Project:
AMP
FileSet
DSR283TWH
released
Annotation file set
: Chromatin state from ChIP-seq for frozen human left atrium lateral free wall of LA1202
Lab:
Patrick T. Ellinor, Broad
Project:
AMP