Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
eQTL
11
gene expression
8
accessible chromatin
4
chromatin state
2
Fine-mapped variants
2
binding sites
2
sQTL
2
target gene predictions
2
variant to gene
1
candidate regulatory elements
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
6
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
tissue
1
cell line
Biosample term
87
monocyte
31
CD8-positive, alpha-beta T cell
24
neural progenitor cell
23
heart
22
brain
21
A549
20
breast cancer cell
20
stomach
19
kidney
17
placenta
16
lung
15
muscle of arm
15
muscle of leg
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
hematopoietic multipotent progenitor cell
12
neuroblastoma cell
11
gastric cancer cell
11
liver
11
thymus
10
B cell
10
HepG2
10
K562
10
MCF-7
10
diffuse intrinsic pontine glioma
10
keratinocyte
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
embryonic stem cell
9
heart left ventricle
9
liposarcoma
9
spinal cord
8
T-cell acute lymphoblastic leukemia
8
adipocyte
8
esophageal adenocarcinoma
8
renal pelvis
8
right kidney
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
fibroblast cell line
7
foreskin fibroblast
7
hESC cell
7
left kidney
7
mature neutrophil
6
Chondroid Chordoma
6
acute myeloid leukemia
6
bronchial epithelial cell
6
cardiac muscle cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast of cardiac tissue
6
hepatocyte
6
left cardiac atrium
6
mammary epithelial cell
6
neuroblastoma cell line
6
renal cortex interstitium
6
spleen
5
CD14-positive, CD16-negative classical monocyte
5
Ewing sarcoma
5
GM12878
5
H1-hESC
5
T cell
5
caudate nucleus
5
esophageal squamous cell carcinoma
5
fibroblast of lung
5
foreskin keratinocyte
5
glioblastoma multiforme cancer stem cell
5
mammary gland epithelial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
temporal lobe
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
HEK293
4
HL-60
4
HS-SY-2 cell
4
HeLa-S3
4
IMR-90
4
Jurkat
4
KARPAS-422 cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
RS4-11 cell
4
Rh-4 cell
4
SK-N-MC
4
Th1 cell
4
Tumor-derived cell line
4
WERI-Rb-1
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
colonic mucosa
4
dermal fibroblast
4
dermis lymphatic vessel endothelial cell
4
diffuse large B-cell lymphoma
4
endodermal cell
4
epithelial cell of prostate
4
erythroblast
4
erythroid progenitor cell
4
fibroblast
4
fibroblast of dermis
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
gastrocnemius medialis
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
islet of Langerhans
4
layer of hippocampus
4
melanoma
4
mononuclear cell
4
natural killer cell
4
neuronal stem cell
4
osteoblast
4
retina
4
skeletal muscle myoblast
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
3
CD4-positive, alpha-beta T cell
3
CMK
3
COLO-320 cell
3
COLO205
3
DND-41 cell
3
GM08714
3
GM10847
3
GM12872
3
GM12873
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM23248
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293-T-REx cell
3
HK-2 cell
3
HT-29
3
HuH-7
3
LHCN-M2
3
LoVo cell
3
MG63
3
MM.1S
3
NHEK
3
Normal Human Astrocytes
3
OCI-LY1
3
OCI-LY7
3
PANC-1 cell
3
PC-3
3
PC-9
3
Peyer's patch
3
RPMI8226
3
RWPE1
3
Raji cell
3
SAEC
3
SH-SY5Y cell
3
SK-N-DZ
3
SK-N-SH
3
SK-N-SH_RA
3
SW480
3
T-47D cell
3
T-helper 1 cell
3
T-helper 17 cell
Organ
6
pancreas
Life stage
1
child
Date released
2
August, 2017
2
February, 2021
1
April, 2019
1
March, 2020
1
September, 2022
Software used
4
chromhmm
2
macs
1
spp
Lab
4
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR575YQR
released
Annotation file set
: Chromatin states for BSS00390 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR538IPB
released
Annotation file set
: Histone modifications annotation for Pancreas Pancreatic_islets from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR081BPN
released
Annotation file set
: Binding sites annotation for Pancreas Pancreatic_islets from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP