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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
39
target gene predictions
8
gene expression
2
chromatin state
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
cell line
1
stem cell
Biosample term
87
monocyte
31
CD8-positive, alpha-beta T cell
24
neural progenitor cell
23
heart
22
brain
20
A549
20
breast cancer cell
20
stomach
19
kidney
17
placenta
16
lung
15
muscle of arm
15
muscle of leg
15
small intestine
14
adrenal gland
14
large intestine
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
hematopoietic multipotent progenitor cell
12
neuroblastoma cell
11
gastric cancer cell
11
liver
11
thymus
10
B cell
10
diffuse intrinsic pontine glioma
10
embryonic stem cell
10
keratinocyte
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
HepG2
9
K562
9
MCF-7
9
Rhabdomyosarcoma
9
heart left ventricle
9
liposarcoma
8
T-cell acute lymphoblastic leukemia
8
adipocyte
8
esophageal adenocarcinoma
8
left kidney
8
mature neutrophil
8
renal pelvis
8
right kidney
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
fibroblast cell line
7
hESC cell
7
spinal cord
6
Chondroid Chordoma
6
acute myeloid leukemia
6
bronchial epithelial cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast of cardiac tissue
6
hepatocyte
6
left cardiac atrium
6
mammary epithelial cell
6
neuroblastoma cell line
6
renal cortex interstitium
6
spleen
5
CD14-positive, CD16-negative classical monocyte
5
Ewing sarcoma
5
T cell
5
cardiac muscle cell
5
caudate nucleus
5
diffuse large B-cell lymphoma
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
foreskin keratinocyte
5
glioblastoma multiforme cancer stem cell
5
mammary gland epithelial cell
5
mononuclear cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
temporal lobe
4
22Rv1
4
CD14-positive monocyte
4
GM12878
4
H1-hESC
4
HS-SY-2 cell
4
Jurkat
4
KARPAS-422 cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
RS4-11 cell
4
Rh-4 cell
4
Th1 cell
4
Tumor-derived cell line
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
colon adenocarcinoma
4
colonic mucosa
4
dermal fibroblast
4
dermis lymphatic vessel endothelial cell
4
endocrine pancreas
4
endodermal cell
4
epithelial cell of prostate
4
erythroid progenitor cell
4
gastrocnemius medialis
4
glioblastoma cell
4
glioma cell
4
heart right ventricle
4
hepatic stellate cell
4
immortal neural cell line cell
4
islet of Langerhans
4
layer of hippocampus
4
lymphoblastoid cell line
4
melanoma
4
natural killer cell
4
neuronal stem cell
4
retina
4
skeletal muscle myoblast
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive, alpha-beta T cell
3
CMK
3
COLO-320 cell
3
COLO205
3
Caco-2 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
HAP-1
3
HEK293
3
HK-2 cell
3
HL-60
3
HT-29
3
HeLa-S3
3
HuH-7
3
IMR-90
3
LHCN-M2
3
LoVo cell
3
MG63
3
MM.1S
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
Peyer's patch
3
RPMI8226
3
RWPE1
3
SK-N-DZ
3
SK-N-MC
3
SW480
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U-266 cell
3
VCaP cell
3
WERI-Rb-1
3
ascending aorta
3
cerebellum
3
chorion membrane
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
cingulate gyrus
3
coronary artery
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell
3
fibroblast
3
fibroblast of dermis
3
fibroblast of lung
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
hematopoietic cell
3
leukemic stem cell
3
lymphoblast
3
mesenchymal stem cell
3
midbrain
3
mononuclear cell of bone marrow
3
muscle of trunk
3
osteoblast
3
pancreas
3
pulmonary artery endothelial cell
Organ
4
embryo
Life stage
2
embryonic
Date released
2
February, 2021
1
August, 2017
October, 2022
1
September, 2022
Software used
2
chromhmm
2
macs
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
month_released!
October, 2022
Showing 4 of 4 results
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Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP