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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
32
histone modifications
11
candidate regulatory elements
7
target gene predictions
6
accessible chromatin
3
gene expression
2
binding sites
2
chromatin state
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
2
bed bed3+
2
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
21
heart
20
A549
19
brain
18
stomach
17
kidney
16
muscle of arm
15
lung
15
muscle of leg
15
placenta
14
adrenal gland
14
small intestine
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
hematopoietic multipotent progenitor cell
11
right lung
11
thymus
10
liver
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
K562
9
breast cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
B cell
8
MCF-7
8
embryonic stem cell
8
neural progenitor cell
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
adipose tissue
7
endothelial cell of umbilical vein
7
heart left ventricle
7
keratinocyte
7
melanoma
7
mononuclear cell
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
6
fibroblast of lung
6
foreskin fibroblast
6
left cardiac atrium
6
mature neutrophil
6
spleen
5
foreskin keratinocyte
5
islet of Langerhans
5
layer of hippocampus
5
mammary epithelial cell
5
mammary gland epithelial cell
5
prostate cancer cell line
5
skeletal muscle myoblast
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
GM12878
4
H1-hESC
4
HeLa-S3
4
HepG2
4
T cell
4
angular gyrus
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
heart right ventricle
4
mesenchymal stem cell
4
muscle of trunk
4
neuroblastoma cell
4
osteoblast
4
ovary
4
pancreas
4
prostate gland
4
regulatory T cell
4
retina
4
sigmoid colon
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BJ cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
HEK293
3
HL-60
3
IMR-90
3
KARPAS-422 cell
3
NT2-D1 cell
3
Peyer's patch
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
acute myeloid leukemia
3
ascending aorta
3
chorion membrane
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
liposarcoma
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
psoas muscle
3
retinal pigment epithelial cell
right cardiac atrium
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
synovial sarcoma cell
3
thoracic aorta
3
tibial artery
3
triple-negative breast cancer
3
trophoblast
2
BE(2)-C
2
BL-2 cell
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD14-positive, CD16-negative classical monocyte
2
CD1c-positive myeloid dendritic cell
2
COLO-320 cell
2
DND-41 cell
2
ECC-1
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
Jurkat
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MM.1S
Organ
4
bronchus
4
epithelium
Life stage
2
unknown
child
Date released
2
February, 2021
2
September, 2022
Software used
2
chromhmm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
right cardiac atrium
relevant_life_stage!
child
Showing 4 of 4 results
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Download
FileSet
DSR702JKN
released
Annotation file set
: Chromatin states for BSS00153 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524OJC
released
Annotation file set
: Chromatin states for BSS00150 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR984CXZ
released
Annotation file set
: Binding sites annotation for Lung HBEC3-KT from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855TRJ
released
Annotation file set
: Binding sites annotation for Lung Bronchial_epithelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP