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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
3
chromatin state
3
target gene predictions
2
accessible chromatin
2
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
2
bed bed3+
2
bed bed9
1
bed bed9+
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
tissue
5
cell line
Biosample term
20
A549
13
common myeloid progenitor, CD34-positive
11
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
9
K562
9
breast cancer cell
8
B cell
8
MCF-7
8
embryonic stem cell
8
mature neutrophil
8
neural progenitor cell
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
endothelial cell of umbilical vein
7
keratinocyte
7
melanoma
7
mononuclear cell
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
6
fibroblast of lung
6
foreskin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
foreskin keratinocyte
5
mammary epithelial cell
5
mammary gland epithelial cell
5
prostate cancer cell line
5
skeletal muscle myoblast
5
trophoblast cell
4
CD14-positive monocyte
4
GM12878
4
H1-hESC
4
HeLa-S3
4
T cell
4
alternatively activated macrophage
4
bronchial epithelial cell
4
cardiac muscle cell
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
glioblastoma multiforme cancer stem cell
4
mesenchymal stem cell
4
neuroblastoma cell
4
osteoblast
4
regulatory T cell
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
HEK293
3
HL-60
3
IMR-90
3
KARPAS-422 cell
3
NAMALWA cell
3
NT2-D1 cell
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
choroid plexus epithelial cell
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
liposarcoma
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
retinal pigment epithelial cell
3
skin fibroblast
3
synovial sarcoma cell
3
triple-negative breast cancer
2
BL-2 cell
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
Jurkat
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NB4
2
NCI-H460 cell
2
NHEK
2
Normal Human Astrocytes
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PANC-1 cell
2
PC-3
2
PC-9
2
PFSK-1 cell
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SJSA1
2
SK-MEL-5 cell
2
SK-N-DZ
2
SK-N-SH_RA
2
SUDHL5
2
SUM-185PE cell
2
SW480
2
T-47D cell
2
T-lymphocyte
2
T47D
2
Th1 cell
2
U-266 cell
2
U-87 MG
2
U2OS
2
VCaP cell
2
WI-38 cell
2
adult acute myeloid leukemia
2
aortic adventitial fibroblast
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
dermis blood vessel endothelial cell
2
diffuse large B-cell lymphoma
2
ectodermal cell
2
endothelial cell
2
epithelial cell of proximal tubule
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fibroblast
2
fibroblast of breast
2
foreskin melanocyte
2
gastric cancer cell
2
glioblastoma cell
2
hepatic stellate cell
2
iPS DF 4.7 Cell Line
Disease term
1
large-cell immunoblastic lymphoma
Organ
2
lymph node
Life stage
2
adult
1
unknown
Date released
2
February, 2021
2
September, 2022
1
May, 2022
Software used
3
chromhmm
2
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_type!
tissue
Showing 5 of 5 results
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Download
FileSet
DSR573NVB
released
Annotation file set
: Chromatin states for BSS00405 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR706YNV
released
Annotation file set
: Chromatin states for BSS01065 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308LDV
released
Annotation file set
: Chromatin state of KARPAS-422 cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR879XGD
released
Annotation file set
: Binding sites annotation for Blood KARPAS-422 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR639MOA
released
Annotation file set
: Binding sites annotation for Blood GM10266 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP