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Schema
Citing CMDGA
Clear Filters
Annotation type
43
target gene predictions
8
gene expression
7
candidate regulatory elements
6
chromatin state
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
4
bed bed9
3
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
4
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
cell line
1
stem cell
Biosample term
22
heart
19
A549
19
brain
19
stomach
17
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
liver
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
breast cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
K562
8
embryonic stem cell
8
heart left ventricle
8
mature neutrophil
8
neural progenitor cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
adipocyte
7
adipose tissue
7
keratinocyte
7
melanoma
7
mononuclear cell
7
spleen
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast cell line
6
left cardiac atrium
5
CD14-positive, CD16-negative classical monocyte
5
foreskin keratinocyte
5
heart right ventricle
5
islet of Langerhans
5
layer of hippocampus
5
mammary gland epithelial cell
5
prostate cancer cell line
5
sigmoid colon
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
HepG2
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of cardiac tissue
4
fibroblast of lung
4
foreskin fibroblast
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
mammary epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
neuroblastoma cell
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
skeletal muscle myoblast
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
CD4-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
Peyer's patch
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
acute myeloid leukemia
3
ascending aorta
3
cardiac muscle cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of dermis
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
liposarcoma
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
osteoblast
3
right cardiac atrium
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
synovial sarcoma cell
3
thoracic aorta
3
tibial artery
3
triple-negative breast cancer
3
trophoblast
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
BJ cell
2
BL-2 cell
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
Caco-2 cell
2
Daoy
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
HAP-1
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
IMR-90
2
Jurkat
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NCI-H460 cell
2
NT2-D1 cell
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PC-3
2
PC-9
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Rh-4 cell
2
SJSA1
2
SK-MEL-5 cell
2
SK-N-DZ
2
SK-N-MC
2
SK-N-SH
2
SUDHL5
Organ
4
connective tissue
4
lung
3
embryo
Life stage
2
embryonic
2
unknown
1
adult
Date released
4
September, 2022
October, 2022
2
August, 2017
1
February, 2021
Software used
6
chromhmm
1
macs
Lab
5
AMP-T2D consortium
2
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
biosample_term_name!
BJ cell
month_released!
October, 2022
Showing 7 of 7 results
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Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805FGA
released
Annotation file set
: Chromatin states for BSS00342 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR223DHC
released
Annotation file set
: Chromatin states for BSS00341 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR910XOT
released
Annotation file set
: Chromatin states for BSS00339 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR646989
released
Annotation file set
: ChromHMM 13-state model for fibroblast of lung
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP