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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
4
chromatin state
3
target gene predictions
1
accessible chromatin
1
binding sites
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
3
bed bed9
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
3
tissue
2
cell line
Biosample term
21
heart
20
A549
19
brain
19
stomach
16
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
liver
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
K562
9
breast cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
B cell
8
MCF-7
8
embryonic stem cell
8
mature neutrophil
8
neural progenitor cell
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
adipose tissue
7
endothelial cell of umbilical vein
7
keratinocyte
7
melanoma
7
mononuclear cell
7
spleen
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
6
fibroblast of lung
6
foreskin fibroblast
6
heart left ventricle
6
left cardiac atrium
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
foreskin keratinocyte
5
layer of hippocampus
5
mammary epithelial cell
5
mammary gland epithelial cell
5
prostate cancer cell line
5
sigmoid colon
5
skeletal muscle myoblast
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
GM12878
4
H1-hESC
4
HeLa-S3
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
islet of Langerhans
4
mesenchymal stem cell
4
muscle of trunk
4
neuroblastoma cell
4
osteoblast
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
HEK293
3
HL-60
3
IMR-90
3
KARPAS-422 cell
3
NAMALWA cell
3
NT2-D1 cell
3
Peyer's patch
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
ascending aorta
3
chorion membrane
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
heart right ventricle
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
liposarcoma
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
retinal pigment epithelial cell
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
synovial sarcoma cell
3
thoracic aorta
3
tibial artery
3
triple-negative breast cancer
3
trophoblast
2
BL-2 cell
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
Organ
3
intestine
3
small intestine
2
embryo
Life stage
2
adult
1
embryonic
Date released
3
September, 2022
1
August, 2017
1
February, 2021
Software used
4
chromhmm
1
macs
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
month_released!
April, 2019
Showing 5 of 5 results
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Download
FileSet
DSR494MHC
released
Annotation file set
: Chromatin states for BSS00716 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR532BPR
released
Annotation file set
: Chromatin states for BSS00271 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR092CAR
released
Annotation file set
: Chromatin states for BSS00270 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR843DDZ
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_HUES6 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR459407
released
Annotation file set
: ChromHMM 13-state model for duodenum mucosa
Lab:
Stephen Parker, UMich
Project:
AMP