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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
37
target gene predictions
36
candidate regulatory elements
23
chromatin state
11
accessible chromatin
7
gene expression
3
binding sites
3
histone modifications
1
eQTL
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
6
ChIP-seq
1
RNA-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
tissue
3
cell line
Biosample term
91
monocyte
30
CD8-positive, alpha-beta T cell
20
breast cancer cell
20
neural progenitor cell
16
islet of Langerhans
12
neuroblastoma cell
11
gastric cancer cell
11
lymphoblastoid cell line
10
diffuse intrinsic pontine glioma
10
liver
9
Rhabdomyosarcoma
9
liposarcoma
9
macrophage
8
HepG2
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
neuroblastoma cell line
7
B-lymphoblastoid cell line
7
fibroblast cell line
7
hESC cell
7
keratinocyte
7
mammary epithelial cell
7
melanoma
7
osteosarcoma
6
Chondroid Chordoma
6
acute myeloid leukemia
6
brain
6
endothelial cell of hepatic sinusoid
6
fibroblast
6
foreskin fibroblast
6
glioblastoma multiforme cancer stem cell
6
neuronal stem cell
6
prostate cancer cell line
6
squamous cell lung carcinoma
5
Ewing sarcoma
5
MCF-7
5
adipose tissue
5
cardiac muscle cell
5
diffuse large B-cell lymphoma
5
embryonic stem cell
5
esophageal squamous cell carcinoma
5
glioblastoma cell
5
hepatocyte
5
melanoma cell
5
osteoblast
5
subcutaneous adipose tissue
5
synovial sarcoma cell
5
triple-negative breast cancer
4
HS-SY-2 cell
4
Jurkat
4
Mantle cell lymphoma
4
RS4-11 cell
4
Rh-4 cell
4
Th1 cell
4
Tumor-derived cell line
4
bronchial epithelial cell
4
colon adenocarcinoma
4
dermal fibroblast
4
endothelial cell
4
erythroid progenitor cell
4
glioma cell
4
immortal neural cell line cell
4
kidney
4
leukemic stem cell
4
metastatic melanoma
4
pancreatic cell line
4
pancreatic ductal cell
4
placenta
4
prostate gland
4
regulatory T cell
4
rhabdomyosarcoma cell
4
substantia nigra
4
tracheal epithelial cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
COLO-320 cell
3
COLO205
3
Caco-2 cell
3
DND-41 cell
3
GM06990
3
GM10847
3
GM12864
3
GM12865
3
GM12872
3
GM12873
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HEK293-T-REx cell
3
HL-60
3
IMR-90
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
Raji cell
3
SAEC
3
SH-SY5Y cell
3
SK-N-MC
3
SK-N-SH_RA
3
T cell
3
T-47D cell
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
amygdala
3
aortic adventitial fibroblast
3
blood cell
3
cartilage tissue
3
caudate nucleus
3
cerebellum
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
cortex of kidney
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hematopoietic cell
3
hepatic stellate cell
3
hypothalamus
3
iPSC derived cell line
3
layer of hippocampus
3
lung fibroblast cell line
3
lymphoblast
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mononuclear cell of bone marrow
3
multiple myeloma cell line
3
myotube
3
natural killer cell
3
nucleus accumbens
3
pancreas
3
pancreatic ductal adenocarcinoma
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
prostate derived cell line
3
putamen
3
renal epithelial cell
3
retina
3
skeletal muscle tissue
3
skin of body
3
spinal cord
2
143B
2
22Rv1
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AGS cell
2
ALL-SIL cell
2
Adipose stromal cell
2
AsPC-1 cell
2
B cell
2
B-cell lymphoma cell
2
BCBL-1 cell
2
BEAS-2B cell
2
BG03
2
BICR 31
2
BT-474 cell
2
BT-549 cell
2
Burkitt's lymphoma
2
BxPC-3 cell
2
C666-1 cell
2
CA46 cell
2
CAL-51 cell
2
CCRF-CEM cell
2
CD1c-positive myeloid dendritic cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD8-Positive T-Lymphocytes
2
CFPAC-1 cell
Organ
4
kidney
3
blood
3
bodily fluid
Date released
5
February, 2021
1
August, 2021
1
October, 2022
Software used
5
macs
1
chromhmm
1
matrix-eQTL
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
esophageal carcinoma
Showing 7 of 7 results
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Download
FileSet
DSR190KUB
released
Annotation file set
: Binding sites annotation for K562 (K562) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR007RUJ
released
Annotation file set
: Histone modifications annotation for Kidney Nephrectomy_sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761JKG
released
Annotation file set
: Histone modifications annotation for Kidney Kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855GPE
released
Annotation file set
: Histone modifications annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR715ILK
released
Annotation file set
: Binding sites annotation for Kidney Kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP