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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
7
accessible chromatin
4
candidate regulatory elements
3
chromatin state
3
target gene predictions
3
variant allelic effects
2
binding sites
2
caQTL
1
eQTL
1
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
2
DNase-seq
1
RNA-seq
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
tissue
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
22
stomach
21
A549
21
heart
19
CD14-positive monocyte
19
HFFc6
19
brain
18
adrenal gland
18
liver
18
lung
18
small intestine
17
placenta
16
islet of Langerhans
16
kidney
16
muscle of arm
15
thymus
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
adipose tissue
13
left lung
13
muscle of back
11
hematopoietic multipotent progenitor cell
11
macrophage
11
right lung
11
spinal cord
10
B cell
10
GM12878
10
pituitary stalk
10
right kidney
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
breast cancer cell
9
left kidney
9
neural progenitor cell
9
renal cortex interstitium
9
renal pelvis
8
H9
8
heart left ventricle
8
lymphoblastoid cell line
8
monocyte
8
psoas muscle
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
fibroblast cell line
7
foreskin fibroblast
7
iPSC derived cell line
7
keratinocyte
7
lymphocyte
7
melanoma
7
mononuclear cell
7
ovary
7
pancreas
7
regulatory T cell
7
sigmoid colon
7
trophoblast cell
6
HepG2
6
T cell
6
body of pancreas
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast of lung
6
mesenchymal stem cell
6
natural killer cell
6
olfactory receptor cell
6
transverse colon
5
HUES8
5
cardiac muscle cell
5
caudate nucleus
5
coronary artery
5
fibroblast of dermis
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
layer of hippocampus
5
mammary epithelial cell
5
mammary gland epithelial cell
5
muscle of trunk
5
neutrophil
5
osteoblast
5
prostate cancer cell line
5
prostate gland
5
retina
5
subcutaneous adipose tissue
5
thyroid gland
4
CD8-positive, alpha-beta T cell
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
bronchial epithelial cell
4
cerebellum
4
chorionic villus
4
embryonic stem cell
4
endocrine pancreas
4
endothelial cell
4
epithelial cell of prostate
4
erythroblast
4
esophagus
4
fibroblast
4
fibroblast of cardiac tissue
4
frontal cortex
4
glioblastoma multiforme cancer stem cell
4
hepatocyte
4
mesendoderm
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuroblastoma cell
4
neuronal stem cell
4
omental fat pad
4
pancreatic ductal cell
4
putamen
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
skin of body
4
substantia nigra
4
testis
4
tibial artery
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
NT2-D1 cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
activated CD4-positive, alpha-beta T cell
3
acute myeloid leukemia
3
ascending aorta
3
blood cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
choroid plexus epithelial cell
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
immortal human breast epithelial cell line cell
3
liposarcoma
3
myotube
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
retinal pigment epithelial cell
3
skin fibroblast
3
tibial nerve
Organ
4
epithelium
2
blood vessel
2
vasculature
Life stage
2
adult
Date released
2
February, 2021
2
September, 2022
1
February, 2024
1
January, 2021
Software used
2
macs
2
r
1
cicero
1
qTLtools
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
ENCODE
5
AMP
1
T1D
RFA
4
AMP
1
AMP2
1
T1D
award.project!
ENCODE
Showing 6 of 6 results
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Download
FileSet
DSR626DXF
released
Annotation file set
: Target gene predictions for BSS01815 thoracic aorta from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR105JNR
released
Annotation file set
: Target gene predictions for BSS01814 thoracic aorta from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR406JQN
released
Annotation file set
: Binding sites annotation for Cardiovascular Primary_endothelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388QAH
released
Annotation file set
: Binding sites annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D