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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
binding sites
2
gene expression
2
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
Annotation type Category
4
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
cell line
1
primary cell
Biosample term
102
monocyte
33
CD8-positive, alpha-beta T cell
27
neural progenitor cell
20
breast cancer cell
18
hepatocyte
17
epithelial cell of proximal tubule
14
glomerular endothelial cell
14
islet of Langerhans
13
endothelial cell
12
neuroblastoma cell
11
H1-hESC
11
cardiomyocytes
11
gastric cancer cell
10
EndoC_BH1
10
diffuse intrinsic pontine glioma
10
endothelial cell of hepatic sinusoid
10
kidney
10
progenitor cell of endocrine pancreas
9
Rhabdomyosarcoma
9
liposarcoma
9
pancreatic ductal cell
9
regulatory T cell
8
HepG2
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
extended pluripotent stem (EPS) cells
8
induced pluripotent stem cell
7
B-lymphoblastoid cell line
7
T-helper 1 cell
7
T-helper 17 cell
7
fibroblast cell line
7
hESC cell
7
keratinocyte
7
kidney loop of Henle thin ascending limb epithelial cell
6
Chondroid Chordoma
6
acute myeloid leukemia
6
embryonic stem cell
6
kidney interstitial cell
6
mammary epithelial cell
6
neuroblastoma cell line
5
Ewing sarcoma
5
MCF-7
5
brain
5
cardiac muscle cell
5
diffuse large B-cell lymphoma
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
glioblastoma multiforme cancer stem cell
5
heart
5
kidney loop of Henle thick ascending limb epithelial cell
5
osteosarcoma
5
prostate cancer cell line
4
B cell
4
HS-SY-2 cell
4
Jurkat
4
Mantle cell lymphoma
4
RS4-11 cell
4
Rh-4 cell
4
Th1 cell
4
Tumor-derived cell line
4
adipocyte
4
adipose tissue
4
bone tissue
4
bronchial epithelial cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
colon adenocarcinoma
4
dermal fibroblast
4
erythroid progenitor cell
4
fibroblast
4
glioblastoma cell
4
glioma cell
4
glomerular visceral epithelial cell
4
immortal neural cell line cell
4
kidney connecting tubule epithelial cell
4
kidney cortex collecting duct principal cell
4
kidney distal convoluted tubule epithelial cell
4
liver
4
lymphoblastoid cell line
4
melanoma
4
nephron progenitor
4
neuronal stem cell
4
osteoblast
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
COLO-320 cell
3
COLO205
3
Caco-2 cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
DND-41 cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
GM06990
3
GM10847
3
GM12864
3
GM12865
3
GM12872
3
GM12873
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
Glomerular Capillary Endothelial Cell
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HEK293-T-REx cell
3
HL-60
3
IMR-90
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
K562
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
NHEK
3
NT2-D1 cell
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Normal Human Astrocytes
3
PANC-1 cell
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Raji cell
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
SAEC
3
SH-SY5Y cell
3
SK-N-MC
3
SK-N-SH_RA
3
T Cell
3
T-47D cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
U-87 MG
3
U2OS
3
Vascular Smooth Muscle Cell / Pericyte
3
WERI-Rb-1
3
WI-38 cell
3
adult endothelial progenitor cell
Organ
4
connective tissue
Life stage
1
adult
Date released
5
February, 2021
1
February, 2024
Software used
4
macs
2
r
1
deeptools
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
biosample_term_name!
fibroblast of lung
Showing 6 of 6 results
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Download
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748DGD
released
Annotation file set
: Histone modifications annotation for Kidney 769-P from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR350VIP
released
Annotation file set
: Binding sites annotation for Kidney 769-P from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP