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Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
14
target gene predictions
10
accessible chromatin
2
histone modifications
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
RNA-seq
1
ChIP-seq
1
scRNA-seq
Available data
1
bed bed3+
1
tsv
1
txt
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
16
epithelial cell of proximal tubule
13
glomerular endothelial cell
10
progenitor cell of endocrine pancreas
9
breast cancer cell
9
endothelial cell
9
extended pluripotent stem (EPS) cells
8
pancreatic ductal cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
melanoma
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
6
kidney interstitial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
prostate cancer cell line
4
foreskin fibroblast
4
glioblastoma multiforme cancer stem cell
4
glomerular visceral epithelial cell
4
hepatocyte
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mammary epithelial cell
4
mesangial cell
4
neural progenitor cell
4
neuroblastoma cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HepG2
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
MCF-7
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
T-cell acute lymphoblastic leukemia
3
Transitional Principal-Intercalated Cell
3
Tumor-derived cell line
3
Vascular Smooth Muscle Cell / Pericyte
3
acute myeloid leukemia
3
adult endothelial progenitor cell
3
cardiac muscle cell
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney resident macrophage
3
liposarcoma
3
macrophage
3
nephron progenitor
3
neuronal stem cell
3
osteoblast
3
pancreatic acinar cell
3
pancreatic beta cell
3
pancreatic delta cell
3
synovial sarcoma cell
3
triple-negative breast cancer
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
H1-hESC
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
IMR-90
2
Jurkat
2
K562
2
Kupffer cell
2
Mantle cell lymphoma
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
PANC-1 cell
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
S-shaped body
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH_RA
2
SUM-185PE cell
2
T-47D cell
2
T-lymphocyte
2
Th1 cell
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
adipocyte
2
adipose tissue
2
adult acute myeloid leukemia
2
aortic adventitial fibroblast
2
bronchial epithelial cell
2
cardiomyocytes (cardiac muscle cell)
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
diffuse large B-cell lymphoma
2
endothelial cell of umbilical vein
2
erythroblast
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fibroblast
2
fibroblast of lung
2
fibroblast of mammary gland
Organ
2
kidney
1
epithelium
Life stage
1
adult
Date released
1
August, 2021
1
February, 2021
Software used
1
macs
1
r
1
seurat
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
2
AMP
RFA
1
AMP
1
AMP2
annotation_type_category!
RNA-seq
biosample_term_name!
activated pancreatic stellate cell
Showing 2 of 2 results
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Download
FileSet
DSR749FQK
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for kidney loop of Henle ascending limb epithelial cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR715ILK
released
Annotation file set
: Binding sites annotation for Kidney Kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP