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Schema
Citing CMDGA
Clear Filters
Annotation type
41
candidate regulatory elements
27
chromatin state
26
target gene predictions
11
accessible chromatin
5
gene expression
3
variant allelic effects
2
binding sites
2
histone modifications
Annotation Category
5
Gene expression levels
2
cis-regulatory elements
Annotation type Category
3
RNA-seq
2
ChIP-seq
1
scRNA-seq
1
snRNA-seq
Available data
4
tsv
2
bed bed3+
File set status
7
released
Genome assembly (visualization)
3
hg19
Organism
7
Homo sapiens
Biosample type
4
tissue
2
in vitro differentiated cells
1
primary cell
Biosample term
16
monocyte
13
islet of Langerhans
11
cardiomyocytes
11
neural progenitor cell
10
H1-hESC
10
progenitor cell of endocrine pancreas
9
breast cancer cell
9
extended pluripotent stem (EPS) cells
induced pluripotent stem cell
8
kidney
8
regulatory T cell
7
T-helper 1 cell
7
T-helper 17 cell
7
melanoma
6
fibroblast cell line
6
kidney interstitial cell
5
mesangial cell
5
osteoblast
5
prostate cancer cell line
5
subcutaneous adipose tissue
4
adipose tissue
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
embryonic stem cell
4
foreskin fibroblast
4
gamma-delta T cell
4
glioblastoma multiforme cancer stem cell
4
heart
4
nephron progenitor
4
neuroblastoma cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Fibroblast
3
HepG2
3
M2 Macrophage
3
MCF-7
3
Mast Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 2 cell
3
Tumor-derived cell line
3
Vascular Smooth Muscle Cell / Pericyte
3
acute myeloid leukemia
3
adipocyte
3
adult endothelial progenitor cell
3
cardiac muscle cell
3
central memory CD8-positive, alpha-beta T cell
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
effector memory CD8-positive, alpha-beta T cell
3
kidney cell
3
kidney resident macrophage
3
liposarcoma
3
macrophage
3
memory B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuronal stem cell
3
skeletal muscle myoblast
3
smooth muscle cell of the coronary artery
3
synovial sarcoma cell
3
triple-negative breast cancer
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
IMR-90
2
Jurkat
2
K562
2
Kupffer cell
2
Mantle cell lymphoma
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
PANC-1 cell
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH_RA
2
SUM-185PE cell
2
T follicular helper cell
2
T-47D cell
2
T-lymphocyte
2
Th1 cell
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
adult acute myeloid leukemia
2
aortic adventitial fibroblast
2
body of pancreas
2
brain
2
cardiac fibroblast
2
cerebellum
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
diffuse large B-cell lymphoma
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
erythroblast
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fallopian tube
2
fibroblast
2
fibroblast of lung
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
frontal cortex
2
gastric cancer cell
2
glial cell
2
glioblastoma cell
2
hematopoietic multipotent progenitor cell
2
hepatic stellate cell
2
immortal neural cell line cell
2
leukemic stem cell
2
leukocyte
2
liver
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
mast cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
metastatic melanoma
2
mononuclear cell of bone marrow
2
myotube
2
naive B cel
2
natural killer cell
2
neuroblastoma cell line
2
omental fat pad
Organ
4
heart
3
connective tissue
Life stage
2
adult
1
embryonic
1
fetal
Date released
4
February, 2021
1
August, 2021
1
February, 2020
1
February, 2024
Software used
5
r
2
macs
1
deeptools
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
induced pluripotent stem cell
organ_slims!
epithelium
Showing 7 of 7 results
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Download
FileSet
DSR321UPS
released
Annotation file set
: Gene expression annotation of heart left ventricle from single-cell transcriptome analysis map the developmental track of the human heart
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239MXB
released
Annotation file set
: Binding sites annotation for Cardiovascular Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR670YAY
released
Annotation file set
: Gene expression levels of Heart fetal from RNA-seq (GSE63634) + RNA-seq (ENCODE) + RNA-seq (GSE106690)
Lab:
AMP-T2D consortium
Project:
AMP