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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
2
histone modifications
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
Target gene links
1
cis-regulatory elements
Annotation type Category
4
HiC
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
4
cell line
2
in vitro differentiated cells
Biosample term
53
HeLa-S3
40
H1-hESC
19
HFFc6
19
K562
15
CD14-positive monocyte
10
pituitary stalk
9
GM12878
9
breast cancer cell
9
endothelial cell
9
pericyte cell
7
H9
7
keratinocyte
7
melanoma
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
fibroblast
6
fibroblast cell line
6
lymphocyte
6
olfactory receptor cell
6
smooth muscle cell
5
HUES8
5
adipocyte
5
foreskin fibroblast
5
iPSC derived cell line
5
mammary epithelial cell
5
pancreatic ductal cell
5
prostate cancer cell line
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Jurkat
4
MCF-7
4
cardiac muscle cell
4
endothelial cell of umbilical vein
4
glioblastoma multiforme cancer stem cell
4
macrophage
4
neural progenitor cell
4
neuroblastoma cell
4
neuronal stem cell
4
osteoblast
4
pancreatic delta cell
3
A549
3
BJAB cell
3
GM18505
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
HCT-116 cell
3
IMR-90
3
MCF 10A cell
3
T-cell acute lymphoblastic leukemia
3
THP-1
3
Tumor-derived cell line
3
U937
3
acute myeloid leukemia
3
astrocyte
3
colon epithelial cell
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
erythroblast
3
fibroblast of lung
3
hepatocyte
3
liposarcoma
3
liver
3
mammary gland epithelial cell
3
monocyte
3
myotube
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
psoas muscle
3
skeletal muscle myoblast
3
spinal cord
3
synovial sarcoma cell
3
triple-negative breast cancer
3
type B pancreatic cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
CD4-positive helper T cell
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM15510
2
GM18526
2
GM18951
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT116
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MM.1S
2
Mantle cell lymphoma
2
NCCIT cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-LY7
2
PANC-1 cell
2
PC-9
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH
2
SK-N-SH_RA
2
SUM-185PE cell
2
T-47D cell
2
T-cell
2
T-lymphocyte
2
Th1 cell
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
adipose tissue
2
adrenal gland
2
adult acute myeloid leukemia
2
aortic adventitial fibroblast
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiomyocytes (cardiac muscle cell)
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
cortical cell of adrenal gland
2
diffuse large B-cell lymphoma
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
gabaergic neuron
2
gastric cancer cell
2
glioblastoma cell
2
glutamatergic neuron
2
heart
2
immortal neural cell line cell
2
islet of Langerhans
2
leukemic stem cell
2
luminal epithelial cell of mammary gland
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
mast cell
2
memory B cell
2
mesenchymal stem cell
2
mesendoderm
2
metastatic melanoma
2
mononuclear cell of bone marrow
2
naive B cell
2
natural killer cell
2
neuroblastoma cell line
2
osteosarcoma
2
pancreatic cancer cell
2
pancreatic cell line
2
peripheral blood-derived erythroblast
Organ
4
embryo
Date released
4
February, 2024
1
February, 2021
1
May, 2021
Software used
1
abc
1
macs
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type_category!
pCHi-C
software_used.software.name!
r
Showing 6 of 6 results
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Download
FileSet
DSR545HRQ
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR067ZYX
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. gut endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976RDI
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. definitive endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412OXF
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. undifferentiated
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP