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Schema
Citing CMDGA
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Annotation type
3
binding sites
2
candidate regulatory elements
2
histone modifications
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
HiC
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
20
A549
20
heart
19
stomach
17
brain
16
lung
16
muscle of arm
15
kidney
15
placenta
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
12
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
breast cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
B cell
8
K562
8
MCF-7
8
liver
8
neural progenitor cell
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
melanoma
7
mononuclear cell
7
spleen
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
6
foreskin fibroblast
6
keratinocyte
5
fibroblast of lung
5
foreskin keratinocyte
5
heart left ventricle
5
mammary gland epithelial cell
5
prostate cancer cell line
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
HeLa-S3
4
HepG2
4
T cell
4
body of pancreas
4
bronchial epithelial cell
4
cardiac muscle cell
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
layer of hippocampus
4
mammary epithelial cell
4
muscle of trunk
4
neuroblastoma cell
4
osteoblast
4
ovary
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
skeletal muscle myoblast
4
testis
4
thyroid gland
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
H1-hESC
3
HEK293
3
HL-60
3
IMR-90
3
NAMALWA cell
3
NT2-D1 cell
3
Peyer's patch
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
adipocyte
3
caudate nucleus
3
chorion membrane
3
choroid plexus epithelial cell
3
dermal fibroblast
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
heart right ventricle
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
liposarcoma
3
mesenchymal stem cell
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
pancreas
3
retinal pigment epithelial cell
3
skeletal muscle tissue
3
skin fibroblast
3
synovial sarcoma cell
3
tibial nerve
3
triple-negative breast cancer
3
trophoblast
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
Jurkat
2
KARPAS-422 cell
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NB4
2
NCI-H460 cell
2
NHEK
2
Normal Human Astrocytes
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PANC-1 cell
2
PC-3
2
PC-9
2
PFSK-1 cell
2
RPMI8226
2
RS4-11 cell
2
RWPE1
Organ
3
lung
Life stage
1
embryonic
Date released
2
February, 2021
1
October, 2022
1
September, 2022
Software used
2
macs
1
chromhmm
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
dermis lymphatic vessel endothelial cell
Showing 4 of 4 results
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Download
FileSet
DSR195QHJ
released
Annotation file set
: Binding sites annotation for IMR-90 (IMR90) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772ORX
released
Annotation file set
: Target gene predictions for BSS00720 IMR-90 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR268PHG
released
Annotation file set
: Binding sites annotation for Lung IMR-90 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP