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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
4
target gene predictions
3
differential activity
3
gene expression
1
variant allelic effects
0
binding sites
Annotation Category
4
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
21
heart
21
stomach
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
small intestine
16
muscle of arm
16
placenta
15
kidney
15
thymus
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
muscle of back
11
hematopoietic multipotent progenitor cell
11
liver
10
B cell
10
GM12878
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
adipose tissue
9
breast cancer cell
9
endothelial cell
9
keratinocyte
9
left kidney
9
neural progenitor cell
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
H9
8
psoas muscle
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
fibroblast cell line
7
foreskin fibroblast
7
heart left ventricle
7
lymphocyte
7
melanoma
7
mononuclear cell
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
HepG2
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast
6
mammary gland epithelial cell
6
olfactory receptor cell
6
ovary
6
pancreas
5
CD8-positive, alpha-beta T cell
5
HUES8
5
body of pancreas
5
cardiac muscle cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
hepatocyte
5
iPSC derived cell line
5
macrophage
5
mammary epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
pancreatic ductal cell
5
prostate cancer cell line
5
regulatory T cell
5
skeletal muscle myoblast
5
thyroid gland
5
transverse colon
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
Jurkat
4
SK-N-SH
4
T cell
4
aorta
4
astrocyte
4
bronchial epithelial cell
4
chorionic villus
4
colon epithelial cell
4
embryonic stem cell
4
endocrine pancreas
4
epithelial cell of prostate
4
erythroblast
4
glioblastoma multiforme cancer stem cell
4
layer of hippocampus
4
mesendoderm
4
monocyte
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic delta cell
4
prostate gland
4
retina
4
skin fibroblast
4
trophoblast
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
NT2-D1 cell
3
OCI-LY7
3
Peyer's patch
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
choroid plexus epithelial cell
3
coronary artery
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
endometrium adenocarcinoma
3
esophagus
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
liposarcoma
3
luminal epithelial cell of mammary gland
3
myotube
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
retinal pigment epithelial cell
3
skeletal muscle tissue
3
synovial sarcoma cell
3
testis
3
tibial nerve
3
triple-negative breast cancer
2
A673
2
Ammon's horn
2
B-lymphoblastoid cell line
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
Organ
lung
4
epithelium
4
pancreas
Life stage
1
adult
Date released
2
January, 2021
1
November, 2021
1
September, 2022
Software used
3
cicero
1
abc
Lab
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
2
T1D
1
AMP
1
ENCODE
RFA
2
T1D
1
AMP
1
ENCODE3
biosample_term_name!
HEK293
organ_slims!
lung
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR803ULZ
released
Annotation file set
: Target gene predictions of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP