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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
candidate regulatory elements
3
histone modifications
2
accessible chromatin
2
binding sites
2
chromatin state
2
eQTL
2
target gene predictions
1
gene expression
1
variant allelic effects
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
ChIP-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
cell line
1
tissue
Biosample term
53
HeLa-S3
40
H1-hESC
19
HFFc6
19
K562
15
CD14-positive monocyte
10
pituitary stalk
9
GM12878
9
breast cancer cell
9
endothelial cell
9
pericyte cell
7
H9
7
fibroblast cell line
7
keratinocyte
7
melanoma
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
fibroblast
6
lymphocyte
6
olfactory receptor cell
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
5
HUES8
5
HepG2
5
adipocyte
5
foreskin fibroblast
5
iPSC derived cell line
5
macrophage
5
mammary epithelial cell
5
neural progenitor cell
5
pancreatic ductal cell
5
prostate cancer cell line
4
CyT49
4
Jurkat
4
MCF-7
4
cardiac muscle cell
4
embryonic stem cell
4
endothelial cell of umbilical vein
4
erythroblast
4
glioblastoma multiforme cancer stem cell
4
liver
4
monocyte
4
neuroblastoma cell
4
neuronal stem cell
4
osteoblast
4
pancreas
4
psoas muscle
4
thymus
3
A549
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
GM18505
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
HCT-116 cell
IMR-90
3
MCF 10A cell
3
T-cell acute lymphoblastic leukemia
3
THP-1
3
Tumor-derived cell line
3
U937
3
acute myeloid leukemia
3
adipose tissue
3
adrenal gland
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
fibroblast of lung
3
hepatocyte
3
islet of Langerhans
3
liposarcoma
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mesendoderm
3
myotube
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
skeletal muscle myoblast
3
spinal cord
3
spleen
3
synovial sarcoma cell
3
triple-negative breast cancer
3
type B pancreatic cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
B-lymphoblastoid cell line
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
CD4-positive helper T cell
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM15510
2
GM18526
2
GM18951
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT116
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MM.1S
2
Mantle cell lymphoma
2
NCCIT cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-LY7
2
PANC-1 cell
2
PC-9
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH
2
SK-N-SH_RA
2
SUM-185PE cell
2
T-47D cell
2
T-cell
2
T-lymphocyte
2
Th1 cell
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
activated CD4-positive, alpha-beta T cell
2
adult acute myeloid leukemia
2
aorta
2
aortic adventitial fibroblast
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
cortical cell of adrenal gland
2
diffuse large B-cell lymphoma
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
gabaergic neuron
2
gastric cancer cell
2
glioblastoma cell
2
glutamatergic neuron
2
heart
2
heart left ventricle
2
heart right ventricle
2
immortal neural cell line cell
2
leukemic stem cell
2
luminal epithelial cell of mammary gland
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
lymphocyte of B lineage (iPSC)
2
mast cell
Organ
1
brain
Date released
September, 2022
2
February, 2021
2
May, 2021
Software used
2
abc
2
macs
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
biosample_term_name!
IMR-90
month_released!
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR133CLX
released
Annotation file set
: Binding sites annotation for Neural Fetal_brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR900GIZ
released
Annotation file set
: Binding sites annotation for Blood BJAB from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273PHJ
released
Annotation file set
: enhancer-gene predicton of BJAB_anti-IgM_anti-CD40_4hr-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR804GYF
released
Annotation file set
: enhancer-gene predicton of BJAB-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP