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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
binding sites
5
chromatin state
4
histone modifications
2
candidate regulatory elements
2
target gene predictions
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
cell line
primary cell
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
21
A549
21
heart
21
stomach
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
small intestine
16
muscle of arm
16
placenta
15
kidney
15
thymus
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
GM12878
10
pituitary stalk
10
right kidney
10
spinal cord
9
MCF-7
9
adipose tissue
9
breast cancer cell
9
left kidney
9
neural progenitor cell
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
H9
8
psoas muscle
7
adipocyte
7
fibroblast cell line
7
heart left ventricle
7
lymphocyte
7
melanoma
7
sigmoid colon
6
HepG2
6
dendritic cell
6
ovary
6
pancreas
5
HUES8
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
iPSC derived cell line
5
mesenchymal stem cell
5
muscle of trunk
5
prostate cancer cell line
5
thyroid gland
5
transverse colon
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
aorta
4
chorionic villus
4
embryonic stem cell
4
endocrine pancreas
4
glioblastoma multiforme cancer stem cell
4
layer of hippocampus
4
mesendoderm
4
neuroblastoma cell
4
prostate gland
4
retina
4
testis
4
trophoblast
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
NT2-D1 cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
breast epithelium
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
endometrium adenocarcinoma
3
esophagus
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
keratinocyte
3
liposarcoma
3
neuronal stem cell
3
skeletal muscle tissue
3
synovial sarcoma cell
3
tibial nerve
3
triple-negative breast cancer
2
A673
2
Ammon's horn
2
B-lymphoblastoid cell line
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18507
2
GM18526
2
GM18951
2
GM23248
2
H7-hESC
2
HAC cell
2
HBMEC cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HUES6
2
HUES64
2
HuH-7
2
KBM-7
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
MDA-MB-231 cell
2
MG63
2
Mantle cell lymphoma
2
NB4
2
NCCIT cell
2
NCI-H460 cell
2
NHEK
2
Normal Human Astrocytes
2
OCI-LY1
2
OCI-LY3
2
PANC-1 cell
2
PC-3
2
PFSK-1 cell
2
Panc1
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SJSA1
2
SK-MEL-5 cell
2
SK-N-DZ
Date released
5
February, 2021
1
March, 2020
1
May, 2021
Software used
5
macs
1
abc
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_type!
primary cell
month_released!
November, 2022
Showing 7 of 7 results
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Download
FileSet
DSR161DPJ
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell KhES-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084KAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_VAL-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR489KOV
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_neural_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026FET
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR618YGD
released
Annotation file set
: Binding sites annotation for Neural Neurons from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR357IHY
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Neuronal_Progenitor_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP