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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
eQTL
10
gene expression
6
accessible chromatin
3
chromatin state
2
Fine-mapped variants
2
binding sites
2
sQTL
2
variant to gene
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
21
heart
21
stomach
17
adrenal gland
17
brain
17
lung
17
small intestine
16
muscle of arm
16
placenta
15
kidney
15
thymus
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
11
liver
11
right lung
10
right kidney
9
adipose tissue
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
psoas muscle
8
spinal cord
7
heart left ventricle
7
sigmoid colon
6
ovary
6
pancreas
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
muscle of trunk
5
thyroid gland
5
transverse colon
4
aorta
4
chorionic villus
4
endocrine pancreas
4
layer of hippocampus
4
prostate gland
4
retina
4
testis
4
trophoblast
4
upper lobe of left lung
3
Peyer's patch
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
esophagus
3
islet of Langerhans
3
skeletal muscle tissue
3
tibial nerve
2
Ammon's horn
2
Brodmann (1909) area 46
2
angular gyrus
2
ascending aorta
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
midbrain
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
parathyroid adenoma
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
urinary bladder
2
uterus
2
vagina
1
amnion
1
arm bone
1
beige adipocyte
1
bladder (urinary bladder)
1
breast carcinoma
1
caput epididymis
1
cardiac ventricle
1
cerebellar cortex
1
colon
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
embryonic facial prominence
1
endometrium
1
endometrium cancer
1
epididymis
1
fallopian tube
1
femur
1
first pancreatic bud
1
gastric (mucosa of stomach)
1
gastroesophageal sphincter
1
germinal center
1
germinal matrix
globus pallidus
1
inferior parietal cortex
1
kidney epithelium
1
left cardiac atrium
1
leg bone
1
mammary gland
1
medulla oblongata
1
medulloblastoma
1
middle frontal gyrus
1
mucosa of stomach
1
occipital lobe
1
pons
1
prefrontal cortex
1
putamen
1
rectum smooth muscle tissue
1
renal connecting tubule
1
respiratory system smooth muscle
1
right lobe of liver
1
skin of body
1
skin of forearm
1
skin of prepuce of penis
1
superior temporal gyrus
1
umbilical cord
1
white adipose tissue
Organ
3
pancreas
Life stage
1
adult
Date released
1
February, 2021
1
January, 2020
1
March, 2020
Software used
1
chicago
1
macs
1
spp
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
biosample_term_name!
globus pallidus
month_released!
January, 2018
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR081BPN
released
Annotation file set
: Binding sites annotation for Pancreas Pancreatic_islets from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR299XDW
released
Annotation file set
: Target gene prediction annotation derived from chromatin loops in islet pcHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP