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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
variant allelic effects
1
accessible chromatin
1
binding sites
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
2
cell line
Biosample term
7
fibroblast
6
endothelial cell of hepatic sinusoid
4
endothelial cell
4
foreskin fibroblast
4
mammary epithelial cell
4
myofibroblast cell
3
cardiac muscle cell
3
endothelial cell of umbilical vein
3
enterocyte
3
hepatocyte
3
macrophage
3
osteoblast
3
skeletal muscle myoblast
2
cardiac fibroblast
2
Schwann cell
2
T cell
2
aortic adventitial fibroblast
2
basal cell
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroblast
2
fibroblast of lung
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
goblet cell
2
keratinocyte
2
mammary gland epithelial cell
2
mast cell
2
mononuclear cell of bone marrow
2
myotube
2
pancreatic ductal cell
2
peripheral blood-derived erythroblast
2
renal epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle fiber
2
smooth muscle cell
2
tracheal epithelial cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Adipose stromal cell
1
CD1c-positive myeloid dendritic cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
Heart fetal (cardiac muscle cell)
1
Ishikawa
1
Liver fetal (hepatocyte)
1
Rhabdoid Tumor of the Kidney
1
Satellite Cells, Skeletal Muscle
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
adipocyte
1
aortic endothelial cell
1
aortic smooth muscle cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
bronchial goblet cell
1
cardiac fibroblast
1
cardiac muscle myoblast
1
chronic lymphocytic leukemia cell
1
colorectal cancer
1
columnar chondrocyte
1
cortical cell of adrenal gland
1
endothelial cell of coronary artery
1
erythroid cell
1
erythroid progenitor cell
1
fibroblast of dermis
1
glomerular endothelial cell
1
granulosa cell
1
head and neck squamous cell carcinoma
1
hepatic stellate cell
1
induced T-regulatory cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
leukemic stem cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mature neutrophil
1
meso-epithelial cell
1
mesothelial cell
1
monocyte
1
mononuclear cell
1
naive t cell
1
neoplastic cell
neuronal stem cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
peripheral blood mononuclear cell
1
peripheral blood stem cell
1
plasma cell
1
pre-B acute lymphoblastic leukemia cell
1
preadipocyte
1
primordial germ cell
1
prostate gland cancer cell
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
regulatory T cell
1
renal cortical epithelial cell
1
renal proximal tubule cell
1
skeletal muscle cell
1
small cell ovarian carcinoma cell
1
smooth muscle cell of the brain vasculature
1
somatic muscle myotube
1
thyroid follicular cell
1
type II pneumocyte
Date released
1
February, 2024
1
May, 2020
1
October, 2022
Software used
2
deltasvm
1
chromhmm
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
biosample_term_name!
neuronal stem cell
Showing 3 of 3 results
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Download
FileSet
DSR073XYT
released
Annotation file set
: Binding sites annotation for cardiac muscle cell (HCM) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR731EZG
released
Annotation file set
: Variant allelic effects annotation of Cardiomyocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR562MNO
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP