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Citing CMDGA
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Annotation type
1504
candidate regulatory elements
1278
target gene predictions
863
chromatin state
480
gene expression
166
eQTL
121
variant allelic effects
111
differential activity
74
Fine-mapped variants
71
accessible chromatin
6
caQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
binding sites
2
other
1
representative DNase hypersensitivity sites
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
hg18
1
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
tissue
Biosample term
1
HepG2
1
islet of Langerhans
Organ
1
liver
1
pancreas
Date released
October, 2022
1
August, 2021
1
March, 2020
Software used
macs
1
cisgenome
1
e-range
1
spp
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
month_released!
October, 2022
organ_slims!
kidney
mouth
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR366OIY
released
Annotation file set
: Binding sites of ChREBP, TF for liver lipogenesis, in HepG2 cells(PMID:21811631)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP