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Citing CMDGA
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Annotation type
18
accessible chromatin
10
gene expression
9
target gene predictions
4
caQTL
3
candidate regulatory elements
2
binding sites
2
histone modifications
variant allelic effects
1
eQTL
Annotation Category
4
Genetic variant effects
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
2
CD4-positive helper T cell
2
endothelial cell
1
coronary artery
1
fibroblast of the aortic adventitia
1
liver
1
macrophage
1
mesenchymal stem cell
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
type I muscle cell
1
type II muscle cell
Organ
2
epithelium
Date released
3
October, 2022
1
February, 2023
Software used
2
matrix-eQTL
2
rasqual
1
eigenmt
Lab
2
Stephen S. Rich Lab @UVA
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
2
T1D
RFA
2
T1D
1
AMP
1
AMP2
annotation_type!
variant allelic effects
Showing 4 of 4 results
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FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP