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Citing CMDGA
Clear Filters
Annotation type
270
accessible chromatin
171
gene expression
139
target gene predictions
119
differential activity
5
eQTL
2
caQTL
2
pQTL
1
variant allelic effects
0
sQTL
Annotation Category
7
Genetic variant effects
Annotation type Category
5
RNA-seq
2
ATAC-seq
Available data
2
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
3
tissue
Biosample term
2
CD4-positive helper T cell
2
articular chondrocyte
2
cartilage tissue
1
synovial joint
Organ
4
connective tissue
Life stage
5
adult
Date released
3
August, 2021
2
May, 2024
2
October, 2022
Software used
3
fastqtl
3
peer
2
matrix-eQTL
2
qTLtools
Lab
3
ITG
2
Doug Phanstiel, UNC
2
Stephen S. Rich Lab @UVA
Project
AMP
3
ITG
2
T1D
2
community
RFA
3
ITG
2
T1D
2
community
annotation_type!
representative DNase hypersensitivity sites
award.project!
AMP
Showing 7 of 7 results
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FileSet
DSR602VGF
released
Annotation file set
: eQTL of primary articular chondrocytes treated with fibronectin fragment (FN-f) from 101 donors
Lab:
Doug Phanstiel, UNC
Project:
community
FileSet
DSR932ZJL
released
Annotation file set
: eQTL of primary articular chondrocytes treated with PBS from 101 donors
Lab:
Doug Phanstiel, UNC
Project:
community
FileSet
DSR474VCE
released
Annotation file set
: eQTL of synovial tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR376WYD
released
Annotation file set
: eQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276XRX
released
Annotation file set
: eQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D