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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
15
target gene predictions
13
accessible chromatin
8
gene expression
2
eQTL
2
histone modifications
1
binding sites
1
caQTL
1
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
2
RNA-seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
13
islet of Langerhans
8
liver
8
macrophage
6
lymphoblastoid cell line
6
subcutaneous adipose tissue
4
adipose tissue
4
monocyte
3
blood cell
3
coronary artery
3
endothelial cell
3
putamen
3
skin of body
3
substantia nigra
2
CD4-positive helper T cell
2
T cell
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
blood
2
brain
2
cartilage tissue
2
caudate nucleus
2
cerebellum
2
fibroblast
2
frontal cortex
2
hypothalamus
2
iPSC derived cell line
2
mesenchymal stem cell
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
2
nucleus accumbens
2
omental fat pad
2
regulatory T cell
2
right atrium auricular region
2
skeletal muscle tissue
2
smooth muscle cell
2
tibial artery
2
tibial nerve
2
type I muscle cell
2
type II muscle cell
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
Leydig cell
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
ascending aorta
1
body of pancreas
1
breast
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fat cell
1
fibroblast of the aortic adventitia
1
gastrocnemius medialis(Muscle - Skeletal)
1
heart left ventricle
1
helper T cell
1
kidney
1
layer of hippocampus
1
left ventricle myocardium
1
lung
1
microglial cell
1
minor salivary gland
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
nephron tubule
1
ovary
1
pancreas
1
pituitary gland
1
placenta
1
progenitor cell
1
prostate gland
1
renal glomerulus
1
retina
right lobe of liver
1
sensory neuron
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stomach
1
synovial joint
1
testis
1
thyroid gland
transverse colon
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
2
musculature of body
1
kidney
Date released
1
August, 2021
1
February, 2024
1
October, 2022
Software used
1
eigenmt
1
matrix-eQTL
1
qTLtools
1
rasqual
Lab
2
Stephen Parker, UMich
1
Katalin Susztak, Upenn
Project
3
AMP
RFA
3
AMP2
biosample_term_name!
right lobe of liver
transverse colon
Showing 3 of 3 results
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Download
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP