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Schema
Citing CMDGA
Clear Filters
Annotation type
16
accessible chromatin
10
gene expression
2
binding sites
2
caQTL
2
histone modifications
2
variant allelic effects
1
eQTL
1
target gene predictions
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Target gene links
Annotation type Category
ATAC-seq
3
snATAC-seq
2
ChIP-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
88
monocyte
54
HeLa-S3
39
H1-hESC
32
CD8-positive, alpha-beta T cell
23
K562
21
heart
21
neural progenitor cell
20
stomach
19
A549
19
HFFc6
19
brain
17
lung
16
kidney
16
muscle of arm
16
placenta
16
small intestine
15
adrenal gland
14
large intestine
14
thymus
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
13
muscle of leg
11
B cell
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
Rhabdomyosarcoma
8
heart left ventricle
8
lymphocyte
8
neuroblastoma cell
8
spinal cord
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
H9
7
HepG2
7
MCF-7
7
adipose tissue
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
psoas muscle
7
spleen
6
Chondroid Chordoma
6
hESC cell
6
hepatocyte
6
liposarcoma
6
mononuclear cell
6
natural killer cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
sigmoid colon
6
squamous cell lung carcinoma
6
trophoblast cell
5
CyT49
5
T cell
5
T-cell acute lymphoblastic leukemia
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
heart right ventricle
5
keratinocyte
5
melanoma cell
5
mesenchymal stem cell
5
osteosarcoma
5
ovary
5
pancreas
5
regulatory T cell
4
CD14-positive monocyte
4
HUES8
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
endothelial cell
4
foreskin fibroblast
4
gastrocnemius medialis
4
iPSC derived cell line
4
layer of hippocampus
4
macrophage
4
mammary gland epithelial cell
4
muscle of trunk
4
prostate gland
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle tissue
4
testis
4
thyroid gland
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
HCT116
3
NAMALWA cell
3
Peyer's patch
3
SK-N-DZ
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
acute myeloid leukemia
3
adipocyte
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
epithelial cell of prostate
3
esophageal squamous cell carcinoma
3
esophagus
3
fibroblast of dermis
3
fibroblast of lung
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
mesendoderm
3
naive T cell
3
neuronal stem cell
3
neurosphere
3
neutrophil
3
osteoblast
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
skeletal muscle myoblast
3
skin fibroblast
3
substantia nigra
3
temporal lobe
3
tibial nerve
3
trophoblast
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18505
2
GM19099
2
GM19193
2
GM23248
2
H7-hESC
2
HAP-1
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HuH-7
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NT2-D1 cell
2
OCI-LY1
2
OCI-LY7
2
PC-3
Organ
4
epithelium
Date released
2
February, 2021
1
February, 2023
1
January, 2021
1
October, 2022
Software used
2
macs
2
rasqual
1
cicero
1
eigenmt
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
4
AMP
1
T1D
RFA
3
AMP
1
AMP2
1
T1D
annotation_type_category!
ATAC-seq
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D