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Citing CMDGA
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Annotation type
1710
candidate regulatory elements
1357
target gene predictions
976
histone modifications
944
chromatin state
905
accessible chromatin
816
binding sites
124
variant allelic effects
72
Fine-mapped variants
63
eQTL
12
gene expression
6
caQTL
5
hQTL
3
meQTL
3
pQTL
3
sQTL
2
other
1
variant to gene
Annotation Category
7
Genetic variant effects
1
Others
Annotation type Category
5
snATAC-seq
1
ATAC-seq
1
ChIP-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
7
GRCh38
Organism
8
Homo sapiens
Biosample type
6
primary cell
1
tissue
Biosample term
1
endothelial cell
1
liver
1
mesenchymal stem cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
2
musculature of body
1
connective tissue
1
epithelium
1
liver
Life stage
1
adult
Date released
5
October, 2022
1
May, 2021
1
May, 2022
1
November, 2019
Software used
6
eigenmt
6
rasqual
1
limix
1
macs
Lab
5
Stephen Parker, UMich
1
AMP-T2D consortium
1
Karen Mohlke, UNC
1
Kyle Gaulton, UCSD
Project
8
AMP
RFA
5
AMP2
3
AMP
month_released!
August, 2020
Showing 8 of 8 results
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FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR801ZQH
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR942GKV
released
Annotation file set
: Annotation for gene TSS
Lab:
Kyle Gaulton, UCSD
Project:
AMP