Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1671
candidate regulatory elements
1318
target gene predictions
975
histone modifications
944
chromatin state
814
binding sites
671
gene expression
598
accessible chromatin
170
eQTL
167
differential activity
83
variant allelic effects
74
Fine-mapped variants
5
hQTL
5
sQTL
4
caQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
7
Genetic variant effects
Annotation type Category
snATAC-seq
4
ATAC-seq
3
quantitative proteomics
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
5
tissue
2
primary cell
Biosample term
2
CD4-positive helper T cell
2
cartilage tissue
1
cerebrospinal fluid
1
coronary artery
1
liver
Organ
2
connective tissue
1
artery
1
blood vessel
1
bodily fluid
1
heart
1
liver
1
vasculature
Life stage
3
adult
Date released
3
August, 2021
2
October, 2022
1
February, 2023
1
May, 2022
Software used
2
fastqtl
2
matrix-eQTL
2
peer
2
rasqual
1
eigenmt
1
r
Lab
2
AMP-T2D consortium
2
ITG
2
Stephen S. Rich Lab @UVA
1
Karen Mohlke, UNC
Project
3
AMP
2
ITG
2
T1D
RFA
3
AMP
2
ITG
2
T1D
annotation_type_category!
snATAC-seq
biosample_term_name!
endothelial cell
smooth muscle cell of the coronary artery
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D